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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactttcttggctttttggcagctaatatgaacatctagatgttctgtaatagctaacgctgatgtacttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA

Basic information

species Oryza sativa
transcript LOC_Os08g03290.3
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 7
gtaagactttcttggct----ttttggcagctaatatgaacatctagatgttctgtaatagctaacgctgatgtacttg-ttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
|| ||   |  ||||||    |  | | |      |  |    || |  |||   |   |  | ||       | ||||  ||||||||||||| || || ||||| ||||| ||   |||||||||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| 
gttagttctctttggctgtattcctaggattcttcagaaggtacttgcagttgcctgtaaaatgacagcatgatgcttgactttcagCCACCCAGAAAACTGTTGACGGACCCTCAGCCAAGGACTGGAGAGGTGGCAGGGCTGCCAGCTTTAACATCATTCCTAGCAGCACCGGTGCTGCCAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GRMZM2G180625_T02 (Zea mays), 3'ss of exon 7
gtaagactttcttggctttttggcagc-taatatgaacatctagatgttctg------taatagctaacgctgatgtacttgt-tttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
|| ||   |  |||||| ||| |||   |         |   || |  | |       |   |  | ||       | ||||  ||||||||||||| ||||| ||||||||||| ||   |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| 
gtgagttctctttggctgtttagcaatgttgagaaggtagtcaggtactttagttggctgtaaaattacagcacgatgcttgcctttcagCCACCCAGAAGACTGTTGATGGACCCTCAGCCAAGGACTGGAGAGGTGGCAGGGCTGCCAGCTTTAACATCATTCCCAGCAGCACCGGTGCTGCCAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA06G18120.1 (Glycine max), 3'ss of exon 7
-------------gtaagactttcttggctttttggcagctaatatgaacatctag-atgttctgtaatagctaac--gctgatgtacttgtttt------cagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
                  | ||  |||| |   || |   || | ||   | |||  ||| | |||  |   || |  | | ||||  |||||||      |||| ||||| ||||| |||||||| || ||   |||||||||||| ||||| || || ||    |||||||||||||| ||||||||||| |||||||| 
gtgagcctattgctcgcaatttgattggttgcatgccttttactgtgt-tacctattatgatatgtcttgcatatccggtttatgtttttgttttgtaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA04G36860.2 (Glycine max), 3'ss of exon 6
gtaagactttc-ttggctttttggcagc-taatatgaacatc----tagatgttctgtaata-gctaacgctgatgtacttgtttt------cagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
|||||  | |   | ||| |||||  || |  ||   |  |     |  |||||  ||  || |  |  | | ||||  |||||||      |||||||||| ||||| |||||||| || ||   ||| |||||||| ||||| || || ||    |||||||||||||| ||||||||||| |||||||| 
gtaagcttatagctcgctatttggttgcctgttacctatcttatcatgcatgttacgtgctaagtcagggattatgtttttgttttgcaaaccagCCACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA04G36870.1 (Glycine max), 3'ss of exon 7
gtaagact-ttcttggctttttggcagctaatatgaacatcta-gatgttctgtaatagctaacgctgatgtacttgtttt------cagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
|| || || ||  | ||| ||||  |  |  | | | |   || |||      |  ||  | | | | ||||  |||||||      |||| ||||| ||||| |||||||| || ||   ||| |||||||| ||||| || || ||    |||||||||||||| ||||||||||| |||||||| 
gtgagcctattgcttgctatttg-tatttcctgttacctattatgatacaagttgctaattcaggtttatgtttttgttttgcaaaccagCTACCCAGAAGACTGTTGATGGGCCATCAGCCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA19G22780.1 (Glycine max), 3'ss of exon 6
-------------------------------------------------------------------gtaagactttcttggctttttggcagc-taatatgaa---catctagatgttc----tgtaatagctaac--gctgatgtacttgtttt---cagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
                                                                     |  | ||| |||      | | ||  | ||   ||   | | | |||   |    |  | ||  ||||   ||  | |   | | ||   ||||||| |||||||| ||||||||||| || |  || |||||||| ||||| || || ||   || |||||||||||| || |||||||| ||||| || 
gtatgtgtgcaatgttttgcatttcttttggcttcacatttgtttttttttttttttttatcagcaaaaacaattttattgaaggggtagaagggttatgccaaacccttttggattcacatgattcactatttaactgacttgtctttctatgttacacagCCACTCAAAAGACTGTTGATGGACCATCAATGAAAGACTGGAGAGGTGGAAGAGCTGCTTCTTGTAACATCATTCCTAGTAGCACTGGAGCTGCTAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA05G06420.1 (Glycine max), 3'ss of exon 6
gtaagactttcttggctttttggcagctaatatgaacatctagatgttctgtaatagctaacgctgatgtacttgtttt-cagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
|||||  | |  ||  ||     |   |    |  ||||   |||   || |  ||  | ||     | |   ||||   ||||||| |||||||| ||||||||||| || |  ||||||||||| ||||| || || ||   || |||||||||||| || |||||||| ||||| || 
gtaagtgtgtaatgttttgcaatccttttggcttcacat---gattcactatt-taattgacatgcctttctatgttacacagCCACTCAAAAGACTGTTGATGGACCATCAATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCTTGTAACATCATTCCTAGTAGCACTGGAGCTGCTAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: GLYMA06G18110.5 (Glycine max), 3'ss of exon 7
gtaagact-ttcttggctttttggcagctaatatg---aacatcta----gatgttctgtaatagctaacgctgatgtacttgtttt------cagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
|| || || || ||  || ||||   | |   |||      | |||    |||      |  ||  | |   | ||||  |||||||      |||| ||||| ||||| ||||||||||| ||   |||||||||||| ||||| || || ||    |||||||||||||| ||||||||||| |||||||| 
gtgagcctattgttcactatttgtttggttgcatgcctgttacctattatgatagatgttgctaagtcagatttatgtttttgttttgcaaatcagCTACCCAGAAGACTGTTGATGGACCATCAGCCAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv01s0010g02460.t01 (Vitis vinifera), 3'ss of exon 7
----------gtaagactttcttggctttt--tggcagctaatatgaacatctagatgttctgtaatagctaacgctgatgt-acttgtt-ttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
          | |   || | ||   ||||    | |   |     |  |  |  |  ||   |  | | |  | |   | | | ||||  ||||||||| || |||||||||||||| || || |||||||||||||| ||||| || || ||    || |||||||| ||||||||||||||||||||||| 
gtagagtattgaacttctcttttaagttttatctgtattcagagaaatgaattgaaaattgattgttggtttcctcccttatgatttgtaattcagCCACACAGAAGACCGTTGATGGGCCATCAAGCAAGGACTGGAGAGGTGGAAGAGCTGCTTCCTTCAACATCATCCCCAGCAGCACTGGTGCTGCCAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv14s0171g00440.t01 (Vitis vinifera), 3'ss of exon 6
----gtaagactttcttggctttttggcagctaatatgaacatctagatgttctgtaatagctaacgctgatgta--cttgttt---tcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
    ||  ||  || ||   |||           |   |      ||   |||| || |   |   | |  | |   | | | |   ||||| || |||||||| ||||||||||| || |  ||||| ||||| |||||||| || |||  ||| ||||| ||||||||||||||||||||||| || 
gttagtgggatgttgtttattttccttttctgtttcaaagtggtgaggatttctttattgatttgtggttctatggccctatgtgattcagCTACACAAAAGACAGTTGATGGACCATCAATGAAGGATTGGAGAGGTGGCAGAGCTGCCTCTTTCAACATTATTCCCAGCAGCACTGGTGCTGCAAAG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 6
lower sequence: Vv17s0000g10430.t01 (Vitis vinifera), 3'ss of exon 7
gtaagactttcttggcttt----ttggcagctaatat---gaacatctagatgttctgtaatagctaacgctgatgtacttgttt---tcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
||| | |||||  |   ||    ||||   |||  ||    |   ||||     | | || ||  |  |     | ||    | |   ||||||||||||||||| |||||||| || || |  ||||||||||| ||||| || || ||    || ||||||||||| ||||||||||| |||||||| 
gtaggtctttcaagctgttgtccttggtgcctatcatttcaagggtcta--ctctgtatattaatttgcttctttttaacactctgaatcagCCACCCAAAAGACTGTTGATGGCCCTTCAATGAAGGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATTCCTAGCAGCACTGGAGCTGCCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669365|gb|CK058051.1|CK058051
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29618937|gb|CB623949.1|CB623949
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29669182|gb|CB665457.1|CB665457
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTTCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218485784|gb|FG945170.1|FG945170
EST:     CAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|5004389|gb|AU069538.1|AU069538
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58657006|gb|CK045686.1|CK045686
EST:     CAACTTTGGTATTATCGACGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGT
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGT
EST: gi|58680834|gb|CK069521.1|CK069521
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218481567|gb|FG958457.1|FG958457
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|163928248|gb|EG714640.1|EG714640
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58676445|gb|CK065132.1|CK065132
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218486798|gb|FG964632.1|FG964632
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|163923212|gb|EG711059.1|EG711059
EST:     TGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: TGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58587834|gb|CF986142.1|CF986142
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|38480389|gb|CF964478.1|CF964478
EST:     GACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: GACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218479178|gb|FG963867.1|FG963867
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29657919|gb|CB654194.1|CB654194
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|33793468|gb|CF322616.1|CF322616
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACT
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACT
EST: gi|163929384|gb|EG713809.1|EG713809
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218501101|gb|FG958200.1|FG958200
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29617661|gb|CB622673.1|CB622673
EST:     CTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29660838|gb|CB657113.1|CB657113
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58586835|gb|CF985143.1|CF985143
EST:     CTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAGAGAGCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGC
genomic: CTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAA-AGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGC
EST: gi|10611378|gb|AU108265.1|AU108265
EST:     ACTGTTCATGCCCATCANTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGTTGGC
genomic: ACTGTTCATG-CCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGC
EST: gi|5851015|gb|AU078187.1|AU078187
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGGATGGGACCGTCCAGCAAGGACTGGAGGGGTGG
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTG-ATGG-ACCGTCCAGCAAGGACTGGAGGGGTGG
EST: gi|29669216|gb|CB665491.1|CB665491
EST:     CTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTTCAGCAAGGACTGGAGGGGTGGCA
genomic: CTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|33798300|gb|CF325007.1|CF325007
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29658831|gb|CB655106.1|CB655106
EST:     TGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: TGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29665516|gb|CB661791.1|CB661791
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218483456|gb|FG953856.1|FG953856
EST:     CAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58589792|gb|CF988100.1|CF988100
EST:     CGACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAATGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|7212737|gb|AU062516.2|AU062516
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTNGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|568853|gb|D39702.1|D39702
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGT
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGT
EST: gi|38475901|gb|CF960034.1|CF960034
EST:     AGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: AGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|33794942|gb|CF323351.1|CF323351
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58590609|gb|CF988917.1|CF988917
EST:     GGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: GGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218479342|gb|FG956036.1|FG956036
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218500454|gb|FG951406.1|FG951406
EST:     CAACTCTGGTA-TATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|38477397|gb|CF961530.1|CF961530
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|11442789|gb|BF430688.1|BF430688
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218494461|gb|FG953576.1|FG953576
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58674350|gb|CK063036.1|CK063036
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218500788|gb|FG960828.1|FG960828
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|572088|gb|D41599.1|D41599
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|55828142|gb|AU062584.3|AU062584
EST:     AACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTTG                         CCACCCAAAAGACCCGTTGATGGGCCCGTCCAGCAAGGACTGGAGGGGTG
genomic: AACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACT-Ggtaagacttt ... ttgttttcagCCACCCAAAAGACC-GTTGATGGACC-GTCCAGCAAGGACTGGAGGGGTG
EST: gi|58679933|gb|CK068620.1|CK068620
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         GCACCCAAAAGACCGTTGATGGACCGTCCAGC
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGC
EST: gi|218479590|gb|FG967769.1|FG967769
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58692167|gb|CK080854.1|CK080854
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29644224|gb|CB649231.1|CB649231
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218486502|gb|FG952282.1|FG952282
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58685936|gb|CK074623.1|CK074623
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTG
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTG
EST: gi|218485005|gb|FG945495.1|FG945495
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58605719|gb|CK033752.1|CK033752
EST:     CTGAT-ACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|700128|gb|D46419.1|D46419
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58674916|gb|CK063603.1|CK063603
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218494865|gb|FG953212.1|FG953212
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218487986|gb|FG954431.1|FG954431
EST:     C-AC-TTGGTATTATCGAGGGTCTGATGACAACTG-TCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|33794940|gb|CF323350.1|CF323350
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58595573|gb|CK006101.1|CK006101
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         GCACCCAAAAGACCGTTGATGGACCGTCC
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCC
EST: gi|396941129|gb|HO188338.1|HO188338
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218494958|gb|FG965713.1|FG965713
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29676409|gb|CB672684.1|CB672684
EST:     CAACTTTGGT-TTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29612747|gb|CB617760.1|CB617760
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29657441|gb|CB653716.1|CB653716
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218479754|gb|FG964344.1|FG964344
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218489362|gb|FG964814.1|FG964814
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218494721|gb|FG969778.1|FG969778
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218496015|gb|FG966482.1|FG966482
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58596874|gb|CK007402.1|CK007402
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|87007673|gb|CI287517.1|CI287517
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|163928370|gb|EG714702.1|EG714702
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29612745|gb|CB617758.1|CB617758
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29687274|gb|CB683549.1|CB683549
EST:     ACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: ACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|38478313|gb|CF962446.1|CF962446
EST:     CTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCANGCAAGGACTGGAGGGGTGGC
genomic: CTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCA-GCAAGGACTGGAGGGGTGGC
EST: gi|33801067|gb|CF326406.1|CF326406
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|27553976|gb|CA997876.1|CA997876
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58675301|gb|CK063988.1|CK063988
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACGACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|163927955|gb|EG714263.1|EG714263
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACC
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACC
EST: gi|33795521|gb|CF323630.1|CF323630
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGAC
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGAC
EST: gi|58662784|gb|CK051470.1|CK051470
EST:     GATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: GATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29683937|gb|CB680212.1|CB680212
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|11442807|gb|BF430706.1|BF430706
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58689282|gb|CK077969.1|CK077969
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|14574852|gb|AU197367.1|AU197367
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58597799|gb|CK008327.1|CK008327
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|29676323|gb|CB672598.1|CB672598
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218491942|gb|FG966682.1|FG966682
EST:     ATTATCGAGGGTCTGAT-ACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: ATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58596704|gb|CK007232.1|CK007232
EST:     CAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|218499384|gb|FG947815.1|FG947815
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCA
EST: gi|58695384|gb|CK084071.1|CK084071
EST:     CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG                         CCACCCAAAAGAACGTTGATGGAACGGTCCAGCAAGGACTGAAGGGTTGGC
genomic: CAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGG-ACCGTCCAGCAAGGACTGGAGGGGTGGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 61 (upstream exon), 75 (downstream exon)
Score: 367

GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTGgtaagacttt ... ttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatatgaacatctagatgttctgtaatagctaacgctgatgtacttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA
                                            cttgttttc  CT-rich tract
                      tgtaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagactttcttggctttttggcagctaatatgaacatctagatgttctgtaatagctaacgctgatgtacttgttttcagCCACCCAAAAGACCGTTGATGGACCGTCCAGCAAGGACTGGAGGGGTGGCAGGGCGGCCAGTTTTAACATCATTCCCAGCAGCACTGGTGCTGCCAAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC