1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ACGATACCGTGCACGGCCAATGGAAGCACAGCGACATCAAGATCAAGGACTCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgatattgatattacagcttagatgaaagtaacttgtttatggtagcgagcgtggaactgatgtttgatcctgtgcaatttgaaag
species | Oryza sativa |
transcript | LOC_Os08g03290.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|29612744|gb|CB617757.1|CB617757
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|218501531|gb|FG968460.1|FG968460
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|33793468|gb|CF322616.1|CF322616
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|11172167|gb|AU164149.1|AU164149
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|58592989|gb|CF991297.1|CF991297
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|5851015|gb|AU078187.1|AU078187
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|29612772|gb|CB617785.1|CB617785
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|568853|gb|D39702.1|D39702
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|38477397|gb|CF961530.1|CF961530
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: CTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|218500788|gb|FG960828.1|FG960828
genomic: CTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|55828142|gb|AU062584.3|AU062584
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: CCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|58679933|gb|CK068620.1|CK068620
genomic: CCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|58674916|gb|CK063603.1|CK063603
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|56158068|gb|C72316.2|C72316
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTNCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|33794940|gb|CF323350.1|CF323350
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|58595573|gb|CK006101.1|CK006101
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: CCAAGACTCTGCTCTTGTGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|218494958|gb|FG965713.1|FG965713
genomic: CCAAGACTCTGCTCTTG-GGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: AAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|218489362|gb|FG964814.1|FG964814
genomic: AAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|58696025|gb|CK084712.1|CK084712
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAG-CGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|29612742|gb|CB617755.1|CB617755
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|29617660|gb|CB622672.1|CB622672
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|33795521|gb|CF323630.1|CF323630
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|11442807|gb|BF430706.1|BF430706
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: CTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|58689282|gb|CK077969.1|CK077969
genomic: CTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|218498172|gb|FG949784.1|FG949784
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|218499384|gb|FG947815.1|FG947815
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAEST: gi|29612746|gb|CB617759.1|CB617759
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
EST: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAG GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
genomic: TCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgat ... aatttgaaagGAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGATACCGTGCACGGCCAATGGAAGCACAGCGACATCAAGATCAAGGACTCCAAGACTCTGCTCTTGGGCGAGAAGCCGGTCACCGTTTTCGGCATCAGgtaacttgatattgatattacagcttagatgaaagtaacttgtttatggtagcgagcgtggaactgatgtttgatcctgtgcaatttgaaag
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