Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactgttgcttttcattccaacaaattggcatattgttacatattgttcccatgggattgcatacaagcaagtaaataatgctatggttattt...

Basic information

species Oryza sativa
transcript LOC_Os08g03290.3
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G180625_T02 (Zea mays), 5'ss of exon 5
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactgttgcttt-tcattccaacaaattggcatattgttacatattgttcc-catgggattgcatacaagcaagtaaataatgc-tatggttattt-
|||||| || ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||  ||||||||| ||  | | | |    |||||        |  | || |    |||| ||||| | | |||||| |  |  |     ||      | | | | || ||   
GAACCCCGAGGAGATCCCGTGGGGTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGACAAGGCTGCTGCACATCTGAAGgtataatttcggcttcacggtcatttgtttgtttcagaatgt----acatgttgtttcacttgggatggattgtacatgtgtggtggttacatttagtgatgct

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G046804_T02 (Zea mays), 5'ss of exon 5
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactgttgcttttcattccaacaaattggcatattgttacatattgttcccatgggattgcatacaagcaagtaaataatgctatggttattt--
||||||||| || || ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||  | ||||||| ||  ||| |  | |             ||  | | ||     |   ||||| |   | ||  || | | |    |    |  | | |   | |    
GAACCCTGAGGAAATCCCGTGGGGTGAGGCTGGCGCTGAGTATGTCGTGGAGTCCACCGGCGTCTTCACTGACAAGGACAAGGCTGCTGCACATCTCAAGgtataatttctgct-ttatggtcctttgtttgtttacttgtttgggtaccatgttctcccag-atcccaaatatgttcattttgagggatgtacatgtgcgg

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA05G06420.1 (Glycine max), 5'ss of exon 4
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactgttgcttttcattccaacaaattggcatattgttaca--tattgttcccatgggat-tgcatacaagcaagtaaataatgctatggttattt
|||||| || || ||||| |||| ||||||||| ||||| ||||| || |||||||| || || |||||||| || || ||||| ||||| ||||||||||| || ||  |     ||  |||   |  |  |||  |     ||| |  | |  || | |       |   |     | ||| || ||    | ||  |   
GAACCCGGAGGAAATTCCATGGGGTGAGGCTGGAGCTGATTATGTTGTTGAGTCCACTGGAGTTTTCACTGATAAAGACAAGGCAGCTGCCCACTTGAAGgt-ttgtctttaagatttcacatcatatgatgttgtgaatcaattataaatgtgattgctactacccatatttggtgtctagtgaaaaagtgaagggcaaa--

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA18G01330.1 (Glycine max), 5'ss of exon 5
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactgttgcttttcattccaacaaattggcatattgttacatattgttcccatgggattgcatacaagcaagtaaataatgctatggttattt--------
||||||||| || ||||| |||| ||||| ||||||||| ||||| || ||||| || ||||| |||||||||||||| |||||||||||||||||||||||        |||||   |   |   |    |||  | |||||||    ||  ||    | |||    |||  |       | || |   |      |          
GAACCCTGAGGAAATTCCATGGGGTGAGGTTGGTGCTGATTATGTTGTTGAGTCAACTGGTGTATTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGgt-------ttgttgtgatctctcttatttgattatc-tattgttgtggatcttttgtgtcggaagatataagattggtccagtagttggagaagcgtaaagggaggg

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 4
lower sequence: GLYMA11G37360.1 (Glycine max), 5'ss of exon 5
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgt--attat---------cactgttgcttttcattccaacaaattggcatattgttacatattgttcccatgggattgcatacaagcaagtaaataatgctatggttattt---------------------------
||||||||| || ||||| |||| ||||| ||||||||| ||||| || ||||| || || || |||||||||||||| |||||||||||||||||||||||   || |          | |  ||  |||   |      |  |      || ||  ||| |  || | ||     | |||  |   ||| |   |||  |||  ||| |                           
GAACCCTGAGGAAATTCCATGGGGTGAGGTTGGTGCTGATTATGTTGTTGAGTCAACTGGCGTATTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGgtttgttgtgatctctcatatttctgtcttttggtttttggatcttttgattttttgaatactaatcacctgtctaggaatattaattagtga--tatgaaatgagtatataattttggattaatgggttatgatcag

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 4
lower sequence: AT3G04120.1 (Arabidopsis thaliana), 5'ss of exon 5
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactgttgcttttcattccaacaaattggcatattgtta-catattgttcccatgggattgcatacaagcaagtaaataatgctatggttattt----------
||||||||| || || || ||||| |||||||| ||||| || || || ||||| || ||||||||||||||||| || |||||||| |||||||||||||| || ||    |||  ||   |         |||  ||  | | |  |  || |   |  |   |||| ||  | ||   || |||   | ||  |  ||          
GAACCCTGAGGATATCCCATGGGCCGAGGCTGGAGCTGACTACGTTGTTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCAGCTCACTTGAAGgt-ttgtcttatttgaattggttatttttgtcttgtaatgatataaatagtttatgtgctagaatttgcttagtatcattcaactaaatttgtgacttgttgtattttcag

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 4
lower sequence: AT1G13440.1 (Arabidopsis thaliana), 5'ss of exon 5
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactgttgcttttcattccaacaaattggcatattgttacatattgttcccatgggattgcatacaagcaagtaaataatgctatggttattt--
||||||||| || || || |||| ||||||||| ||||| | ||| || ||||| || ||||||||||||||||| || ||||||||||||||||||||||| | | |   | |  |||  ||    |  | | |  |  |||||   ||||       |  |||   |||  | ||   | ||  |   || ||||||   
GAACCCTGAGGACATCCCATGGGGTGAGGCTGGAGCTGACTTTGTTGTTGAGTCTACTGGTGTCTTCACTGACAAAGACAAGGCTGCTGCTCACTTGAAGgtttgaacttggatcttttatat----aatagtcgagaacttgtt---tatt-------taagatc-tatatcatcat-catattgtttcattgttattcag

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv01s0010g02460.t01 (Vitis vinifera), 5'ss of exon 5
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactg-ttgcttttcattccaacaaa----ttggcatattgttacatattgttcccatgggattgcatacaagcaagtaaataatgctatggttattt
|||||| || ||||| || ||||||||| | |||||||| ||||| ||||| || || || || |||||||||||||| ||||| ||||| ||||||||||| |  |  |   ||   |    |||  |        ||   | |||| || ||  ||||    | || |||||    |   |||     ||    |||| ||| 
GAACCCAGAAGAGATCCCATGGGCTGAGACCGGTGCTGACTATGTTGTGGAATCTACTGGAGTGTTCACTGACAAGGACAAGGCCGCTGCCCACTTGAAGgtctggtttccaattatctcattttctgattgtggctttatgaaattgata-atgatgttgattttggtttgcaatttat--agtgctctataac-tggtgatt-

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 5'ss of exon 4
lower sequence: Vv17s0000g10430.t01 (Vitis vinifera), 5'ss of exon 5
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactgttgcttttcattccaacaaattggcatattgttac-atattgttcccatg-ggattgcatacaagcaagtaaataatgctatggttattt
|||||| || |||||||| |||| |||| | || ||||| | ||| || ||||| || ||||| |||||||||||||| ||||||||||| || |||||||| || || ||| |  ||   |||   |    |||     |  | |    ||||||    ||  |||  ||| ||   || || |   || |      | ||
GAACCCAGAGGAGATTCCATGGGGTGAGACCGGAGCTGAATTTGTTGTTGAGTCAACTGGTGTGTTCACTGACAAGGACAAGGCTGCTGCCCATTTGAAGgt-ttgtc-ctgatatttcgtattagtatgttttgttgcttattcattgaattgttatgctgcagatgtcatccatcaaaatatacggtggttgatacaatt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669365|gb|CK058051.1|CK058051
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|5004389|gb|AU069538.1|AU069538
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|29612744|gb|CB617757.1|CB617757
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218501531|gb|FG968460.1|FG968460
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|33793468|gb|CF322616.1|CF322616
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|11172167|gb|AU164149.1|AU164149
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218500999|gb|FG966561.1|FG966561
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTAGTCATCTCTG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTG
EST: gi|58592989|gb|CF991297.1|CF991297
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|5851015|gb|AU078187.1|AU078187
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|29612772|gb|CB617785.1|CB617785
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|7212737|gb|AU062516.2|AU062516
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|568853|gb|D39702.1|D39702
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|33794942|gb|CF323351.1|CF323351
EST:     GCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: GCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|38477397|gb|CF961530.1|CF961530
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|11442789|gb|BF430688.1|BF430688
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|58674350|gb|CK063036.1|CK063036
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218500788|gb|FG960828.1|FG960828
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|55828142|gb|AU062584.3|AU062584
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|58679933|gb|CK068620.1|CK068620
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTGTGTCATCTCAGCCCCGAGCAAAGATGCTCCGAT
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGT-TGTCATCTCTGCCCCGAGCAAAGATGCTCCGAT
EST: gi|218486502|gb|FG952282.1|FG952282
EST:     GGCTGCTGCTCAC-TGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: GGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218485005|gb|FG945495.1|FG945495
EST:     CTGCTCACTTGAA-                         GG-GGTGCC-AGAA-GTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: CTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|58674916|gb|CK063603.1|CK063603
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218494865|gb|FG953212.1|FG953212
EST:     CACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: CACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|56158068|gb|C72316.2|C72316
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCNCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|33794940|gb|CF323350.1|CF323350
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|58595573|gb|CK006101.1|CK006101
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218494958|gb|FG965713.1|FG965713
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218489362|gb|FG964814.1|FG964814
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218494721|gb|FG969778.1|FG969778
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218496015|gb|FG966482.1|FG966482
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|87007673|gb|CI287517.1|CI287517
EST:     TCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: TCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|29612742|gb|CB617755.1|CB617755
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|27553976|gb|CA997876.1|CA997876
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|29617660|gb|CB622672.1|CB622672
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|163927955|gb|EG714263.1|EG714263
EST:     TTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: TTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|33795521|gb|CF323630.1|CF323630
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|11442807|gb|BF430706.1|BF430706
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|58689282|gb|CK077969.1|CK077969
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|218499384|gb|FG947815.1|FG947815
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|29612746|gb|CB617759.1|CB617759
EST:     AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: AGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG
EST: gi|58695384|gb|CK084071.1|CK084071
EST:     GCTGCTCACTTGAAG                         GGTGGTGCCAAGAAGGTTGTCATCTCAGCCCCGAGCAAAGATGCTCCGATG
genomic: GCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 610

GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcac ... ctgaaaacagGGTGGTGCCAAGAAGGTTGTCATCTCTGCCCCGAGCAAAGATGCTCCGATGTTTGTCTGCGGTGTCAACGAGGACAAGTACACTTCAGATATTGATATTG




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACCCTGACGAGATTCCGTGGGCTGAGGCTGGTGCTGAGTATGTCGTGGAGTCCACCGGTGTCTTCACTGACAAGGAGAAGGCTGCTGCTCACTTGAAGgtattatcactgttgcttttcattccaacaaattggcatattgttacatattgttcccatgggattgcatacaagcaagtaaataatgctatggttattt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG