Skip to another splice site:
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 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
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 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttctttccgagtgacaattttctactttcagttggacttttggtttggttcttaattgactcgttatcatccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG

Basic information

species Oryza sativa
transcript LOC_Os08g03290.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G180625_T02 (Zea mays), 3'ss of exon 6
--gtatttttctttccgagtgacaattttctactttcag---ttggacttttggtttggttcttaattg-actcgttatcatccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG
  ||  | | |||    | | |   |||     || | |   ||      | |  |   || |||||   |     | ||||  |  |||||||||||||||||||||| ||||| |||||  |||||||||||||||||||||||||||
gtgtgctgtccttcttaaatcattttttatctgttcctgcccttccgtcgtagaatcatttattaatgatatctaatgtcataaaccagGTCATTCATGACAACTTTGGCATTATTGAGGGCTTGATGACAACTGTTCATGCCATCACTG

upper sequence: LOC_Os08g03290.3 (Oryza sativa), 3'ss of exon 5
lower sequence: GRMZM2G046804_T02 (Zea mays), 3'ss of exon 6
gtatttttctttccgagtgacaattttctactttcagttggacttttggtttgg--ttcttaattgac-----tcgttatcatccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG
||    |    | |   | |  ||| | ||  |     ||  |||    | | |  |  ||  || ||         | ||||  |  ||||||||||||||||||| || ||| | |||||| |||||||||||||||||||||||||||
gtgcactgtccttctcttaagcattctgtagctgtttctgctcttccaatgtaggatcatttgttaacgatgtctagtgtcataaaccagGTCATTCATGACAACTTCGGCATTGTTGAGGGTTTGATGACAACTGTTCATGCCATCACTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669365|gb|CK058051.1|CK058051
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29618937|gb|CB623949.1|CB623949
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29669182|gb|CB665457.1|CB665457
EST:     AGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: AGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|5004389|gb|AU069538.1|AU069538
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58657006|gb|CK045686.1|CK045686
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGACGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|163928248|gb|EG714640.1|EG714640
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58676445|gb|CK065132.1|CK065132
EST:     CCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: CCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218486798|gb|FG964632.1|FG964632
EST:     CCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: CCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58587834|gb|CF986142.1|CF986142
EST:     TTGTCGCGAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218479178|gb|FG963867.1|FG963867
EST:     CCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: CCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29657919|gb|CB654194.1|CB654194
EST:     AGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: AGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|33793468|gb|CF322616.1|CF322616
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|163929384|gb|EG713809.1|EG713809
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|11172167|gb|AU164149.1|AU164149
EST:     GTCTCAAATGCTTAGCTGCACCACAAACTGCCTTGCTTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGGTCTGATGACAACTGTTCA
genomic: GTCTCAAATGCT-AGCTGCACCACAAACTGCCTTGCT-CCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGG-TCTGATGACAACTGTTCA
EST: gi|218501101|gb|FG958200.1|FG958200
EST:     CACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: CACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29660838|gb|CB657113.1|CB657113
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58592989|gb|CF991297.1|CF991297
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTT
EST: gi|5851015|gb|AU078187.1|AU078187
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29665516|gb|CB661791.1|CB661791
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58589792|gb|CF988100.1|CF988100
EST:     TCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACGACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|7212737|gb|AU062516.2|AU062516
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|568853|gb|D39702.1|D39702
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|33794942|gb|CF323351.1|CF323351
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|38477397|gb|CF961530.1|CF961530
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|11442789|gb|BF430688.1|BF430688
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218494461|gb|FG953576.1|FG953576
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58674350|gb|CK063036.1|CK063036
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218500788|gb|FG960828.1|FG960828
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|572088|gb|D41599.1|D41599
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|55828142|gb|AU062584.3|AU062584
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58679933|gb|CK068620.1|CK068620
EST:     TTGTCTCAAATGCTAGCTGGACCACAAACTGGCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218479590|gb|FG967769.1|FG967769
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58692167|gb|CK080854.1|CK080854
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29644224|gb|CB649231.1|CB649231
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218486502|gb|FG952282.1|FG952282
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTC-TCTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCA
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCAT-TCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCA
EST: gi|58685936|gb|CK074623.1|CK074623
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218485005|gb|FG945495.1|FG945495
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|700128|gb|D46419.1|D46419
EST:     GCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: GCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58674916|gb|CK063603.1|CK063603
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218494865|gb|FG953212.1|FG953212
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|56158068|gb|C72316.2|C72316
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTT
EST: gi|33794940|gb|CF323350.1|CF323350
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58595573|gb|CK006101.1|CK006101
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGGCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218494958|gb|FG965713.1|FG965713
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29612747|gb|CB617760.1|CB617760
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218479754|gb|FG964344.1|FG964344
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGTTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218489362|gb|FG964814.1|FG964814
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218494721|gb|FG969778.1|FG969778
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218496015|gb|FG966482.1|FG966482
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58596874|gb|CK007402.1|CK007402
EST:     CCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: CCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|87007673|gb|CI287517.1|CI287517
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|163928370|gb|EG714702.1|EG714702
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29612745|gb|CB617758.1|CB617758
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|33801067|gb|CF326406.1|CF326406
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|27553976|gb|CA997876.1|CA997876
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58675301|gb|CK063988.1|CK063988
EST:     CTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACGACTGTTCAT
genomic: CTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|163927955|gb|EG714263.1|EG714263
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|33795521|gb|CF323630.1|CF323630
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29683937|gb|CB680212.1|CB680212
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|11442807|gb|BF430706.1|BF430706
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58689282|gb|CK077969.1|CK077969
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|14574852|gb|AU197367.1|AU197367
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|58597799|gb|CK008327.1|CK008327
EST:     TGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTGCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCT-CCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29676323|gb|CB672598.1|CB672598
EST:     CAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: CAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|218499384|gb|FG947815.1|FG947815
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
EST: gi|29612746|gb|CB617759.1|CB617759
EST:     TGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTTGCCA-G                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCA
genomic: TGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTT-GCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCA
EST: gi|58695384|gb|CK084071.1|CK084071
EST:     TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAG                         GTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT
genomic: TTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 61 (downstream exon)
Score: 591

GATGTTTGTCTGCGGTGTCAACGAGGACAAGTACACTTCAGATATTGATATTGTCTCAAATGCTAGCTGCACCACAAACTGCCTTGCTCCTCTTGCCAAGgtatttttct ... catccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactttcagttggacttttggtttggttcttaattgactcgttatcatccaatagGTCATTCATGACAACTTTGGTATTATCGAGGGTCTGATGACAACTGTTCATGCCATCACTG
                               aattgac  putative branch site (score: 591)
                          ttcttaatt  TA-rich tract