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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg...

Basic information

species Oryza sativa
transcript LOC_Os06g37180.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G181151_T02 (Zea mays), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttt-tatcttttatgatgttgtatactttgtttctttctgttttatt-acctattcttagaccttaattttaaggaatcatatactaatttg
 ||||| || ||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||| || || ||||||||||   | |||  ||| || | | || |  | || |||   ||  | | || |||| |     | || |           | | ||   |    |  ||  
GATTGCTCTAACAACAGCAGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTCATCTTGACAGATATGAGCTCTTATGCAGACGCACTTCGTGAGgtatggagttttgatattttgtgtcatatcttgtattttcagtccatatcttgtatttagggcctgtttggttccttgcccaggcaaggttgccttgctt--

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G094497_T01 (Zea mays), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttc--tttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg
 ||||| || ||||| || ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| || ||||||||||| || |||||||||||  | ||||  | || | | || |  | || ||||  ||  | | ||||||| | ||  |  | | |  ||     |   ||    | ||    || |
GATTGCTCTAACAACAGCGGAATATTTGGCATATGAATGTGGGAAGCATGTACTTGTTATCTTGACAGATATGAGCTCTTATGCAGATGCACTTCGTGAGgtattgag-ttttggtattgtgtcatatcttgtattttgagtccatctttgttttagtgccattgttaatatattttccgtcctgagatctttag-ggttcg

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA10G42940.2 (Glycine max), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttctttct----gttttattacctattcttagaccttaatt----ttaaggaatcatatactaatttg-----------------------------------------------------------------------------
 ||||| || || ||||| ||||||||||| ||||||||||| ||||| || ||||| ||  | |||||||||||||| ||||| ||||| || ||||||||| ||| | ||  |   ||  |  | | | | |             |    |  ||   |||| ||  ||| | |||||     || |  | | | || ||  | ||                                                                             
TATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttaccttcaactgttattagtttggaagaagcaacaaaaagataggggacttgaaacct-tttataggctttaatgatgatttaaaattgacattcttttatgcctttggtttattcttggagtatgagaaataactgaaaatatttctataacaatttgcatgacacttgatcccgtag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA09G38110.2 (Glycine max), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgcttt---ttatcttttatgatgttgta-tactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg
 ||||| || || ||||| ||||||||||||||||||||||| ||||| || ||||| ||  | |||||||||||||| ||||| ||||| || ||||||||| |   |       || ||||||| ||   ||   |                 | | ||    ||  ||| |  ||  ||      ||  | | ||  ||  
TATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgcaccaaaaactaacttttataataaggtggcaaaagaaaagaaaagagatgagtaatcttttatagcctcta--ttgggattatagtttccttgtt--

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattct-tagaccttaatttt---aaggaatcatatactaatttg
 ||||| || || ||||| ||||||||||||||||||||||| ||||| || ||||| ||  | || ||||||||||| ||||| ||||| || ||||||||| | | | |   | || |||| ||   ||       |         |   |   |  | || | ||| |  ||   ||   | || ||||||   |  |   
TATTGCTCTTACTACTGCTGAATATTTGGCATATGAATGTGGCAAGCATGTTCTTGTGATACTAACTGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatgtacctaaaa-ctattataataaggtggcaaaagaaaagaaaagagatgggaaatcttttatagtctctatcattgccatgggatcatagtttcct---

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 10
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattcttagaccttaattttaagg-aatcatatactaatttg
 ||||| || || ||||| ||||||||||| ||||||||||| |||||||| ||||| ||  | ||||| |||||||| ||||| ||||| || ||||||||| ||| | ||| | || || | |  ||| | |    |   |     | |     || |           |  |||| | |  ||| | | | | | || 
TATTGCTCTTACTACTGCTGAATATTTGGCTTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGACATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaatttacctttaa-ctattgttagtttggaaaagaagcaacaaaaagataggagacttgaaacattttatggatttaatgataattagaaattgacttt

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 10
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtatt--ttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg
 || ||||| |||||||| || || ||||||||||||||||| ||||| || ||||||||  | ||||| |||||||| || || ||||| || ||||||||  |    | | |||   |  | || |      |  |    ||     || |      |||    | ||   ||||  ||   || | |||  || |    
TATCGCACTTACAACTGCTGAGTACTTGGCATATGAATGTGGCAAGCATGTCCTTGTCATTCTCACAGACATGAGTTCCTACGCCGATGCTCTTCGTGAGgtgataaccgatatttgcatgctctgttcacaattcttgaactttgagatgataggaagcctgaaat-agtgtttaacgtt---gactaatacccttag---

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattc---ttagaccttaattttaaggaatcatatactaatttg
|||||| || ||||| || |||||| |||| |||||||||||||| ||||| ||||| || ||||| ||||||||||| ||||| ||||| || |||||||||   ||     ||| |  ||      |   | |||| |||| | |  | || || ||| |||   || ||   |||  || || ||   ||          
AATTGCCCTCACAACAGCTGAATATCTGGCTTATGAATGTGGGAAACACGTCCTTGTTATATTGACGGATATGAGTTCTTATGCTGATGCTCTTCGTGAGgtaaaatga---atatttgataccggagtagttcctttatttcataccatgttttttcctcttcatgtttgataataagattgagaaactgtag---------

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgcttt-ttatcttttatg-atgttgtatactttg----tttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg
|||||| || ||||| || ||||||||||| ||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||||| || ||||||||| |  | ||   | || ||| || ||||   ||  ||      ||  |||  | |||       |||   | || | || | ||                    
AATTGCCCTAACAACCGCTGAATATTTGGCTTATGAATGTGGAAAGCATGTGCTTGTTATATTGACAGACATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaatgagtttcactgtcctttgtgtatgtcccatgattcaaaatttgatttaagctttgaataaaattaacaaacgtgaactctag-------------------

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg---
|||||| || |||||||||||||||||||| ||||| ||||||||||| || || || || || |||||||||||||| ||||||||||| || ||||||||| |    | | |    || |   |   |  |   | |  |  |||| | ||||||||     ||  ||    ||   ||  |   |     || ||||   
AATTGCTCTCACAACTGCAGAATATTTGGCTTATGAGTGTGGGAAGCATGTTCTAGTTATATTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaataaattctctgctattgaattttcagggtctatagcatagttct-tattattaccgtacttt--actaatataacaaacagatagtcgttagtttgata

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg--
|||||| || || ||||| |||||||| |||||||||||||| || || || ||||||||  | |||||||||||||| ||||||||||| || |||||||||      ||||   ||||| | |   || ||  |||||   | ||| |  |  ||   |     | | |||||     |     | |  |  ||||    
AATTGCTCTCACCACTGCTGAATATTTAGCATATGAATGTGGCAAACATGTTCTTGTCATACTAACAGATATGAGTTCTTATGCAGATGCTCTTCGTGAGgtaacgattttttctgcttttgtcaa--tgaatggtttgtgattgtctttccttataaaaaccaagataacttaaagactaattgcctttcaaaaattacac

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: PP1S100_117V6.1 (Physcomitrella patens), 5'ss of exon 9
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtat---tttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg
||||||||| || ||||| |||||||  || ||||| ||||||||||| ||| | |||||  | |||||||||||||| || ||||||||| | || |||||     |||     | ||   |  | | |||| ||| ||  ||  |  || ||  ||| | |       |   |||  |  |  || |  |  | || ||| 
AATTGCACTCACTACTGCTGAATATTATGCTTATGAGTGTGGGAAGCATGTGTTGGTCATACTTACAGATATGAGTTCTTACGCAGATGCGTTGCGAGAGgtgcaaatttttccctcatggctacttacgttg-atagttcattaataactattc-attccattgatagggcttttatatccattgattagtgcattatttt-

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 5'ss of exon 8
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtat-----tttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattctt-agaccttaat--tttaaggaatcatatactaatttg---------------------------------------------------------------------
||||||||| |||||||| || || |  || ||||| ||||| |||||||| || |||||| |||| |||||||||||||| ||||||||  | |||||||||      ||| | ||  |  | |  |     | | |  | || | |||     | | ||     || || | |  ||| |  | |||  |||      ||| ||||                                                                     
AATTGCACTTACAACTGCTGAGTACTACGCTTATGAGTGTGGAAAGCACGTTCTGGTCATCCTGACGGATATGAGTTCATACGCAGATGCATTGCGTGAGgtaccagtctttaccttaaagatctgcttgccct-tgtggtatggtacttctgactctgtttttggtttttgaaatgttagtgttctaaaaaatgcccctctattttgttggttctaagtctgcacctttagtatgccagaatgacatattcttatgatccttaactatgcgaacag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 8
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgta----ttttgctttttatcttttatgatgttgtatacttt-------gtttctttctgt-----tttattacctattcttagaccttaattttaaggaatcat-atactaatttg---------------------------------------------------------------------------
||| || || || ||||| ||||| |  || ||||||||||||||||| || || |||||| |||| |||||||||||||||||||||||||| |||||||||    | || || || |    || |    | |  | ||||       |||   | ||||     | ||    ||| ||          || | ||  | |  | |  | ||||||                                                                           
AATCGCCCTTACTACTGCTGAATACTACGCTTATGAATGTGGGAAGCATGTCCTGGTCATCCTGACGGATATGAGTTCATATGCAGATGCGCTGCGTGAGgtacaagtgtttctcttaaagacttttcgcttggactcctttttcagaagttagctcctgtgaaattctacatgctactccgcagttggtatctgaaatagtttttaagcaaatttgtaatctattcagttggtttttaattaagaccttcagtgtgctacaaattttttccactctcaattcttcaaatag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: EFJ13375 (Selaginella moellendorffii), 5'ss of exon 8
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtat-----tttgctttttatcttttatgat-gttgtatactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg
 |||||  |||| || ||||||||| |||| ||||| || ||||| || ||||||||||| ||||| || |||||||| ||||| |||||  | ||||||||||     | || ||    | ||| ||||  ||| |        |  |||| |||                                                  
GATTGCGTTGACGACGGCAGAATATCTGGCTTATGATTGCGGGAAACATGTGCTTGTCATTTTGACCGACATGAGTTCGTATGCGGATGCATTGCGTGAGgtatgatcgtatgtttcaagtttttcatgagagttatgataaccatggctttgtgtag------------------------------------------------

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 9
lower sequence: EFJ11911 (Selaginella moellendorffii), 5'ss of exon 8
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgcttttta--tcttttatgat-gttgtatactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg
 |||||  |||| || ||||| ||| |||| ||||| || ||||| || ||||||||||| ||||| || |||||||| ||||| |||||  | ||||||||||  |   ||| |  | | | ||||  | | |           |||| |||                                                  
GATTGCGTTGACGACGGCAGAGTATCTGGCTTATGATTGCGGGAAACATGTGCTTGTCATTTTGACCGACATGAGTTCGTATGCGGATGCATTGCGTGAGgtatggtatgtttcaagtttgtcatgagagctatgataaccagggctttgtgtag------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33684047|gb|CF312286.1|CF312286
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|33798187|gb|CF324953.1|CF324953
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|58685054|gb|CK073741.1|CK073741
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|29668004|gb|CB664279.1|CB664279
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAAATGCGCTCCGTGAG                         GTATCAGCAGCC
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCC
EST: gi|58605789|gb|CK033822.1|CK033822
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|58675652|gb|CK064339.1|CK064339
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|33793646|gb|CF322707.1|CF322707
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCG
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCG
EST: gi|218488216|gb|FG965996.1|FG965996
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|58674437|gb|CK063123.1|CK063123
EST:     GCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: GCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|58654849|gb|CK043529.1|CK043529
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGGTGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|2431508|gb|C73928.1|C73928
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|700311|gb|D46602.1|D46602
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|33675121|gb|CF303360.1|CF303360
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|300215980|gb|HO088606.1|HO088606
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|58594202|gb|CF992510.1|CF992510
EST:     GTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: GTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|27554550|gb|CA998450.1|CA998450
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|700120|gb|D46411.1|D46411
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|700095|gb|D46386.1|D46386
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|218488188|gb|FG959862.1|FG959862
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|58688525|gb|CK077212.1|CK077212
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
EST: gi|29665772|gb|CB662047.1|CB662047
EST:     TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAG                         GTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT
genomic: TGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 71 (downstream exon)
Score: 95

AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgct ... ttatatgtagGTATCAGCAGCCCGAGAAGAAGTGCCAGGTAGGCGTGGGTATCCTGGATATATGTATACTGATCTGGCAACCATATATGAGCGAGCTGGGCGTATTGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTGCACTGACAACTGCAGAATATTTGGCATATGAATGTGGGAAGCACGTGCTTGTCATCTTGACAGATATGAGTTCATATGCAGATGCGCTCCGTGAGgtattttgctttttatcttttatgatgttgtatactttgtttctttctgttttattacctattcttagaccttaattttaaggaatcatatactaatttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG