1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagtttttgctcaattcaggtgcactgctatggaaattcatagttaagtgcatgttcttttatcagtacggatggtggctaaacttatatttctcttctgataatattaataatgtcttccgatgtttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAACAGGGATATCAACCATTGATGTCATGAACTCCATTGCTCGAGGCCAAAA
species | Oryza sativa |
transcript | LOC_Os06g37180.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|42591928|gb|CK738414.1|CK738414
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|2309809|gb|C25964.1|C25964
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGC-TACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|428226|gb|D24374.1|D24374
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29668004|gb|CB664279.1|CB664279
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29641774|gb|CB646781.1|CB646781
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|33793646|gb|CF322707.1|CF322707
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|56550172|gb|CX056276.1|CX056276
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29631355|gb|CB636364.1|CB636364
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29683215|gb|CB679490.1|CB679490
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29630856|gb|CB635865.1|CB635865
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29617703|gb|CB622715.1|CB622715
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29675287|gb|CB671562.1|CB671562
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29669854|gb|CB666129.1|CB666129
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29630446|gb|CB635455.1|CB635455
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29681069|gb|CB677344.1|CB677344
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAAEST: gi|29642143|gb|CB647150.1|CB647150
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
EST: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTG GAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
genomic: CATTGATAATGGCCCACCTATTTTGCCAGAGGCCTACTTGGATATCTCTGgtaagttttt ... tttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAA
aaacttatatttctcttctgataatattaataatgtcttccgatgtttattccagGAAGTTCAATTAATCCCAGTGAAAGAACCTATCCAGAAGAGATGATCCAAACAGGGATATCAACCATTGATGTCATGAACTCCATTGCTCGAGGCCAAAA
tattaat putative branch site (score: 120)
tttattcc putative PPT
tatatttctcttctga TA-rich tract