Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaataactattgaaataatcccatgctgatgtctcttttagaagtaaatttaatattctatctttatctgcag

Basic information

species Oryza sativa
transcript LOC_Os06g37180.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G181151_T04 (Zea mays), 5'ss of exon 5
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaat-aactattgaaataatcccatgctgatgtctcttttagaagtaa--------atttaatattctatctttatctgcag----------------------------------
|||||||||||||| |||||||| |||||||| ||||||||||| || || || ||||||||||| ||||| |||||||||||||| |||  | | | || ||      |||   | || |   ||  | |  ||| ||||             |  ||   ||||| || |  |                                  
CTTTATGCCAACTACGCAATTGGAAAGGATGTTCAGGCCATGAAGGCAGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgtttcgagtgaaataaattcctaagggcttgttcgggttgcgtgcagacgtaaccgaacaagccctaagttagttctttttcagatgtccaaaacctaatgttctgttacttcttgctcag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GRMZM2G094497_T02 (Zea mays), 5'ss of exon 13
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaataactattgaaataatcccatgctgatgtctcttttagaagt---aaatttaatattctatctttatctgcag--
||||||||||||||||| ||||| |||||||| ||||||||||| || || || ||||||||||| ||||| |||||||||||||| |||  | | | |      | | | ||  | | |  | ||| ||| |||      ||| ||||| |||| |   |   ||||   
CTTTATGCCAACTATGCTATTGGAAAGGATGTTCAGGCCATGAAGGCTGTCGTTGGAGAGGAGGCACTCTCGTCTGAGGATCTGgtctgttgcgagtga-----aataaattcgtaagttagt-tctttttcagacccccaaaacttaatgttctgttccttattgcacag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA18G48280.1 (Glycine max), 5'ss of exon 14
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaataactattgaaataatcccatgctgatgt-------ctcttttagaagtaaatttaatattctatctttatctgcag----------
 | ||||| || ||||| ||||| |||||||||||||| ||||||||||| || ||||| || || || || |||||||| ||||| | | |||| |      |     | ||   |     |||        | |  | |||||     || || |  |  ||  |||  |           
-TCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGGtctct-actacttttctcttgggaattcttgtttgagtgtagtgagattgtccttgaagtggtggtactaattaagtttattctttatgatcaacagc

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA20G24070.1 (Glycine max), 5'ss of exon 15
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaataactattgaaataa-tcccatgctgatgtctcttttagaagtaaatttaatattctatctttatctgcag--------------------------
|| ||||| || ||||| ||||| |||||||||||||| |||||||| || || ||||| || || || || |||||||| ||||| | | |  | |  ||||    |||| | | ||  |  ||| ||||    |||| || ||    ||  |    ||      |                          
CTCTATGCAAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCAGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctaataactttctatcttgataagtactatattt-tgtttcttc---aagtgaaatttcccttgaagtggtactaatggaactccccctccccttttattaacag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: GLYMA09G38110.1 (Glycine max), 5'ss of exon 14
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaataactattgaaa----taatcccatgctgatgtctcttt--tagaagtaaatttaatattctatctttatctgcag---------
|| ||||| || ||||| ||||| |||||||||||||| |||||||| || || ||||| || || || || |||||||| ||||| | |      |  || |||  |    |  |   |   || ||| | | |  | |||||     || || |  || ||  |||             
CTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAAGAAGCACTTTCATCTGAGGACCTGgtctctactacttttctcttgggaattcttgtttgagtatggtgtgtttgtccttgaagtggtggtactaattaattttattctttttgatcaacag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: AT1G20260.1 (Arabidopsis thaliana), 5'ss of exon 14
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaataactattgaaataatcccatgctgat--gtctcttttagaagtaaatttaatattctatctttatctgcag----------------
|| || || || |||||||| || || ||||| || ||||||||||| ||||| ||||| || || || ||||| |||||||||||   || ||  | |||     |||| ||   | |  ||     |  | || | | ||   ||||     |     || |   |                
CTATACGCAAATTATGCAATCGGAAAAGATGTTCAAGCCATGAAAGCTGTTGTTGGAGAAGAAGCTCTGTCTTCCGAGGATCTGgtacctctctc-tgacttcaccaatattcgtgttcctatcaagatactgtatatgcaacaataattactcacaacaatttattgtgttgtgtgtttgtag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: AT4G38510.4 (Arabidopsis thaliana), 5'ss of exon 15
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaataactattgaaataatcccatgctgatgtctcttttagaagtaaatttaatattctatctttatctgcag-------
 | |||||||| || || ||||| ||||| || ||||||||||||||||| || ||||| || || || ||||| ||||||||||| | ||     |   | ||   | | ||  |   || | ||  |||||    |    |||| |  || | ||||||||  |       
TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTGGTTGGAGAAGAAGCTCTTTCTTCCGAGGATCTGgtctctcttcttttcttcttaccacagtctaa--atgctttccgttttat---tcctcttaaca--ctttttttatctgatgcaaacag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 5'ss of exon 14
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcac----taataactattgaaataatcccatgctgatgtctcttttagaagtaaatttaatattctatctttatctgcag---------
|| ||||| || |||||||||||||||||||| || || |||||||| || || ||||| || || || |||||||||||||||||   || |    | |||| |  | |  | |||  |     ||  || || ||  |  | |  ||| |   | ||     || ||          
CTCTATGCAAATTATGCAATTGGGAAGGATGTTCAAGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCTTCTGAGGATCTGgtacatctcactcttataaattatcatttcatctgaaatgaatccctattgtaagaaaacaactaacaggttgtccgacccttcactggaaacag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 5'ss of exon 14
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgt--------ttgtcactaataactattgaaataatcccatgctgatgtctcttttagaagtaaatttaatattctatctttatctgcag--------------------------------------------
|| ||||| || ||||| ||||| |||||||||||||| |||||||| || || |||||||| || ||||||||||||||||||||        || || ||  |   |  || |  ||     || |  |   | ||| | |  |   | ||  | |   |  | ||                                                  
CTATATGCGAATTATGCTATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTCGGAGAGGAAGCACTCTCTTCTGAGGATCTGgtatctctctttctctctcctcctttctgtagaaactatgtgtttgt---tttttcacatctttctctagcaataatttctcatagattaaaatcacaaagtattaacctggggttgggttgtctaaaattcag

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 5'ss of exon 14
lower sequence: PP1S425_12V6.1 (Physcomitrella patens), 5'ss of exon 13
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaataactattgaaataatcccatgctgatgtctcttttagaagt----aaat-ttaatattct--atctttatctgcag--------------------------------------------------------------
 | || || |||||||| ||||| |||||||| || |||||||| || || |||||||| || ||  | ||||| ||||||||||| |    || ||  |||||       | |   |  ||  ||       ||| |    | || || ||  | |  | | ||||||  ||                                                              
TTGTACGCAAACTATGCGATTGGAAAGGATGTACAAGCCATGAAGGCTGTGGTGGGAGAAGAAGCCTTGTCTTCAGAGGATCTGgtatccatctcatt-ctatttgcccgttacgcagtggacatcctacaatgaaatctccatatgttgatggttttgaacattatctctagtacgttatctctggtctgaagcttttcactccctaatgacactctcaaccggctctatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58693038|gb|CK081725.1|CK081725
EST:     AGGCCATGAAAGCCCTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGATTTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88231545|gb|CI231394.1|CI231394
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|58600785|gb|CK011313.1|CK011313
EST:     CGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATGTGAGAGGAAATTTGTTACACAAGGA
genomic: CGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|58692000|gb|CK080687.1|CK080687
EST:     GGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACCAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86539339|gb|CI179545.1|CI179545
EST:     CTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: CTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|87038558|gb|CI193180.1|CI193180
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|25777934|gb|CA752684.1|CA752684
EST:     GAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGATTTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86491766|gb|CI134399.1|CI134399
EST:     TTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: TTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86413995|gb|CI068202.1|CI068202
EST:     CGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: CGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|24468720|gb|CA305669.1|CA305669
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGATTTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86435739|gb|CI106972.1|CI106972
EST:     GCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTG-TACAACAAGG
genomic: GCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTAC-ACAAGG
EST: gi|29665773|gb|CB662048.1|CB662048
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29681070|gb|CB677345.1|CB677345
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86854632|gb|CI258925.1|CI258925
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86537237|gb|CI177443.1|CI177443
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88197212|gb|CI197062.1|CI197062
EST:     AGGCCATGAAAGTCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86435529|gb|CI106762.1|CI106762
EST:     TGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: TGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|89167624|gb|CI109025.1|CI109025
EST:     GGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|5055986|gb|AU075365.1|AU075365
EST:     AGGCCATAAAAGCCGNTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGNGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|396941172|gb|HO188381.1|HO188381
EST:     GGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGATTTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29675288|gb|CB671563.1|CB671563
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|33654401|gb|CF277015.1|CF277015
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29642144|gb|CB647151.1|CB647151
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88959693|gb|CI002303.1|CI002303
EST:     GCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|89187389|gb|CI047456.1|CI047456
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|58695002|gb|CK083689.1|CK083689
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86436404|gb|CI118126.1|CI118126
EST:     AGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29684019|gb|CB680294.1|CB680294
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|89182845|gb|CI045603.1|CI045603
EST:     ATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: ATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|27545836|gb|CA764026.2|CA764026
EST:     CATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGATTTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: CATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29630857|gb|CB635866.1|CB635866
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGATTTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|89180535|gb|CI044814.1|CI044814
EST:     AGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86427613|gb|CI072710.1|CI072710
EST:     GTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88988424|gb|CI037661.1|CI037661
EST:     GGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCGTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|89196223|gb|CI397225.1|CI397225
EST:     GGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGG-ATTCCTTGACAAATTTGAGAGGAAATTTGTTACACCAGGA
genomic: GGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|8856554|gb|AU093872.1|AU093872
EST:     AGAGGAGGCNCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTNTTCCNCAAGGA
genomic: AGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88198947|gb|CI198797.1|CI198797
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29630447|gb|CB635456.1|CB635456
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGATTTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88234951|gb|CI236153.1|CI236153
EST:     AGAGGAGGCGCTCTCCTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29633930|gb|CB638939.1|CB638939
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTTTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29678975|gb|CB675250.1|CB675250
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTTTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88200196|gb|CI200046.1|CI200046
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|86536379|gb|CI176585.1|CI176585
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|89194788|gb|CI003252.1|CI003252
EST:     CCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: CCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|58677361|gb|CK066048.1|CK066048
EST:     GTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|33683140|gb|CF311379.1|CF311379
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|25801982|gb|CA757943.1|CA757943
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CCTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|89189318|gb|CI048857.1|CI048857
EST:     TTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: TTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|300215980|gb|HO088606.1|HO088606
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGATTTCCTTGAC
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGAC
EST: gi|86535166|gb|CI175372.1|CI175372
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88245887|gb|CI245736.1|CI245736
EST:     GAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|87039627|gb|CI194249.1|CI194249
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|27554550|gb|CA998450.1|CA998450
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29678974|gb|CB675249.1|CB675249
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|58682214|gb|CK070901.1|CK070901
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88977392|gb|CI025129.1|CI025129
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|7332665|gb|AU086011.1|AU086011
EST:     GGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGCCAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29668005|gb|CB664280.1|CB664280
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|396941162|gb|HO188371.1|HO188371
EST:     GAAATGCCGTTGTAGGAGATGAGGCGCTCTATTCGGAGGATCAG                         TTTTATTTGG-ATGTCCTTGACAAATCTGAGAGGAAATTTGTTACACAAGG
genomic: GAAA-GCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAAT-TCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGG
EST: gi|58662859|gb|CK051545.1|CK051545
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29617704|gb|CB622716.1|CB622716
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGATTTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|87024279|gb|CI257020.1|CI257020
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29684020|gb|CB680295.1|CB680295
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88258060|gb|CI360646.1|CI360646
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|89189334|gb|CI048873.1|CI048873
EST:     AGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|29669855|gb|CB666130.1|CB666130
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88247213|gb|CI247062.1|CI247062
EST:     CTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: CTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|58688525|gb|CK077212.1|CK077212
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTC
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTC
EST: gi|88902578|gb|CI088116.1|CI088116
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|58685434|gb|CK074121.1|CK074121
EST:     GGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88956307|gb|CI092595.1|CI092595
EST:     GGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|56157325|gb|D41816.2|D41816
EST:     AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGG
genomic: AGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
EST: gi|88991142|gb|CI108529.1|CI108529
EST:     GAGAGGAGGCGCTCTCTTCTGAGGATCTG                         CTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA
genomic: GAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 50 (downstream exon)
Score: 25

CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcact ... ttatctgcagCTTTATTTGGAATTCCTTGACAAATTTGAGAGGAAATTTGTTACACAAGGAGCATATGATACAAGAAACATCTTTCAGTCACTTGACCTAGCATGGACAT




<











<


<









Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTATGCCAACTATGCAATTGGGAAGGATGTCCAGGCCATGAAAGCCGTTGTGGGAGAGGAGGCGCTCTCTTCTGAGGATCTGgtttgtcactaataactattgaaataatcccatgctgatgtctcttttagaagtaaatttaatattctatctttatctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT