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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG

Basic information

species Oryza sativa
transcript LOC_Os06g37180.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G094497_T03 (Zea mays), 3'ss of exon 1
ttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaata----aatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
| || |       | |  |||||| |||  | ||| |   |  ||||||  |  || || | ||    |  |||| ||| |||||  |  | |  |  |||||||||| ||||| ||||||||||| ||||| || |||||||| || ||||||||||||||||| |||||||| ||||||||||||
tagcatgttggtctcatgatttat-ttaccatctatttcat--tttgttgggcatttaatactagtataccatgtctaatattgtaat-ctacccctaaaacagATATCACACACCCAACTCCTGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G181151_T01 (Zea mays), 3'ss of exon 10
--ttgcgttggatctttaccatttatgttattacctaatgtgtgct--ttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
   |       | || | |  | | |   |  |   ||    || |     ||||  |  ||  |   |  |||  ||| |||||  |  | |  |  |||||||||| ||||| |||||||| || ||||| || |||||||| || ||||||||||||||||| |||||||| ||||||||||||
taataaaacacagctctcctgtgttttcgaggagaaaaaaattgttggccatttaa-cgcaagtat--accatggctaatattgtaat-ctactcctaaaacagATATCACACACCCAACTCCGGACCTTACTGGATACATTACTGAGGGACAGATATACATTGATAGGCAGCTCCATAACAGACAG

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GLYMA10G42940.3 (Glycine max), 3'ss of exon 10
ttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
  |   || |  | ||| | ||     || | |||   ||     || ||  |||||| || | |||         ||| |  | |    | ||  ||||||||||| || |||||||||||||| || || || || || || || ||||||||||| |||||||||||| |||| ||||||
--gtaatgaaa-tatacaagtt----catcagctatcttgcatgatggtt--tcttaa-cactgaatg--------attatattttgaacttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GLYMA09G38110.1 (Glycine max), 3'ss of exon 10
ttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
  | | || |   |||      || |||| | |||   ||    |  |  | ||| ||        | ||  | |   | |    |    | ||  |||||||||||||||||||||||||||||||| || || ||||| || ||||||||||| |||||||||||| || ||||||| |||
--gtgatgaaatattattga--atcttatcagctatcatgca--taatgcactctcaat-------tctgactgattgtttttcttgaacttctgtacagATATTACACATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAGTTGTATAACAGGCAG

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GLYMA20G24070.1 (Glycine max), 3'ss of exon 11
ttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
             | |  |  |||   | |   | |  | |  |   |   |  || |||| | |||         ||| |  | |    | ||  ||||||||||| || |||||||||||||| || || || || || || || ||||||||||| |||||||||||| |||| ||||||
------------gtaatgaaatatagaagttaatcagctatcttgcataatggttttaacactgaatg--------attatattttgaacttctgtacagATATTACGCACCCAACTCCTGATCTAACAGGATATATCACTGAGGGGCAGATATACATCGACAGGCAGCTGTATAATAGACAG

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GLYMA18G48280.1 (Glycine max), 3'ss of exon 10
ttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG-
    | || |   |||      || |||| | |||   ||    || |  | ||| ||        | ||  | |   | |    |    | ||  ||||||||||| |||||||||||||||||||| || || ||||| || ||||||||||| || ||||| ||| || ||||||| ||| 
---tgatgaaatattattga--atcttatcagctatcatgca--ttatgcactctcaat-------tctgactgattatttttcttgaacttctgtacagaTATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATCGACAGACAGTTGTATAACAGGCAGG

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: AT1G76030.1 (Arabidopsis thaliana), 3'ss of exon 10
ttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
    ||   ||| |      ||| |  | | ||||   | |  ||  ||||   | | | ||   |  | ||   | ||||  | |  ||   | | ||||||| || ||||||||||| |||||||| || |||||||| ||||| |||||||| || || ||||| || || |||||||||
----gtaaaatcatc-tttcttaagccaatccctagattctattt--tttatcttgagaaaactcaattcttactcgttgttgtttgacaaattgatcagATATCACTCATCCAACTCCGGATCTTACTGGTTACATTACTGAAGGTCAGATATATATCGATAGGCAACTTCACAACAGACAG

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: Vv18s0001g01020.t01 (Vitis vinifera), 3'ss of exon 10
-ttgcgttgg-atctttaccatttatg-ttattacctaatgtgtgctttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
 |   ||| | || || |  || | ||  ||||      ||         | | ||  ||   || | | ||       |      | |||  |    | |||||||||| ||||||||||| |||||||| || || ||||| || || |||||||||||||| ||||| || || ||| | |||
gtaatgttagcattttcaggatgtctggctattcttccctgcacatcagttcttgtaatagtgaacagacattacctgaaaccaattattttttgtccaccagATATTACGCATCCAACTCCAGATCTTACTGGTTATATTACTGAGGGCCAGATATACATTGATAGGCAACTCCACAACCGGCAG

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: Vv03s0038g02760.t01 (Vitis vinifera), 3'ss of exon 10
ttgcgttggatctttaccatttatgttattacctaatgtgtgctt-tgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
                  || |     || | | |   ||  ||  || | ||  ||   || || |   |    ||| |              |  |||||||| |||||||| ||||| ||||| ||||| || || || || || ||||| ||||||||||| ||||| || ||  |||||
---------------gtaatgtcaagcatcatccatattgatctagtggtgagaatttctcattatagtggcactacactcactgaacctgattttcacagATATAACACATCCCACTCCCGATCTCACGGGTTATATCACTGAGGGCCAGATTTACATTGACAGACAGCTCCACAATCGACAG

upper sequence: LOC_Os06g37180.1 (Oryza sativa), 3'ss of exon 10
lower sequence: PP1S85_75V6.1 (Physcomitrella patens), 3'ss of exon 9
----------------------------------------------------------------------------------ttgcgttggatctttaccatttat-gttattacctaatgtgt--gctttgtttagtcttaaacaataaatatgtttaacattgtgc-tgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
                                                                                  ||  ||     ||| ||| | ||  |   |||  | || | |  |  ||||    | ||   |  ||  | |  | |   | |||  |||   |   |   |||||||||| ||||| | |||||||||||| || |||||||| ||||| || || ||| | ||  ||||| | || || ||||||
gttagttgcatcctccatttatcactaatttcttatattagtggacttagtgatggagaactacccttatttgatactttgtttctgtccttacttgaccttctacaggccttaatttatttctttgaattgtgatttttttttctttaggt-tactgagtttcgtgtatgtcgtactttttgcagATATTACCCATCCTATTCCTGATCTTACAGGATACATTACAGAAGGTCAAATTTACGTGGATCGGCAGTTACAAAATAGACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33684047|gb|CF312286.1|CF312286
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|58685054|gb|CK073741.1|CK073741
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|58605789|gb|CK033822.1|CK033822
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|58675652|gb|CK064339.1|CK064339
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|29630857|gb|CB635866.1|CB635866
EST:     CCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: CCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|218488216|gb|FG965996.1|FG965996
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|58674437|gb|CK063123.1|CK063123
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|58654849|gb|CK043529.1|CK043529
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|2431508|gb|C73928.1|C73928
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAGTGCCTAATGATG                         ATATTACANATCCAACTNCTGATCTTACGGGGTACANTACCGA-GGACAGT
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|700311|gb|D46602.1|D46602
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGNCAAG
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACA-G
EST: gi|33675121|gb|CF303360.1|CF303360
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|300215980|gb|HO088606.1|HO088606
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|58594202|gb|CF992510.1|CF992510
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|27554550|gb|CA998450.1|CA998450
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|700120|gb|D46411.1|D46411
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATNATG                         ATATTACACATNCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGN
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|29678974|gb|CB675249.1|CB675249
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|700095|gb|D46386.1|D46386
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|218488188|gb|FG959862.1|FG959862
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|58662859|gb|CK051545.1|CK051545
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|29669855|gb|CB666130.1|CB666130
EST:     CAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: CAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|58688525|gb|CK077212.1|CK077212
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|29665772|gb|CB662047.1|CB662047
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA
EST: gi|56157325|gb|D41816.2|D41816
EST:     AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATG                         ATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAA-GACAGA
genomic: AAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 70 (upstream exon), 60 (downstream exon)
Score: 101

ATGTATACTGATCTGGCAACCATATATGAGCGAGCTGGGCGTATTGAAGGAAGATCAGGCTCCATTACCCAAATTCCCATTCTAACAATGCCTAATGATGgtaagtgact ... tcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG
                        gtttaac  putative branch site (score: 101)
                                        tttcatcct  putative PPT
       tcttaaacaataaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttgcgttggatctttaccatttatgttattacctaatgtgtgctttgtttagtcttaaacaataaatatgtttaacattgtgctgtttcatcctaaacagATATTACACATCCAACTCCTGATCTTACGGGGTACATTACCGAAGGACAGATATACATTGACAGGCAGCTGCATAACAGACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - ttatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt