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GTCTTTGAAGGCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcctcttattcatctcttcctccttttatcttcacttcctggtatccatagtgatttaagtgttctaataggttaatcactttgagctgaacag...
species | Oryza sativa |
transcript | LOC_Os06g37180.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29633929|gb|CB638938.1|CB638938
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|42591928|gb|CK738414.1|CK738414
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|2309809|gb|C25964.1|C25964
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|428226|gb|D24374.1|D24374
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29668004|gb|CB664279.1|CB664279
genomic: GTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: ATACCACTGTGCAGATCACAAGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29641774|gb|CB646781.1|CB646781
genomic: ATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|56550172|gb|CX056276.1|CX056276
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29631355|gb|CB636364.1|CB636364
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29683215|gb|CB679490.1|CB679490
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29630856|gb|CB635865.1|CB635865
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29617703|gb|CB622715.1|CB622715
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|66927287|gb|CX114135.1|CX114135
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACAACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCGGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29675287|gb|CB671562.1|CB671562
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29669854|gb|CB666129.1|CB666129
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29630446|gb|CB635455.1|CB635455
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29681069|gb|CB677344.1|CB677344
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGAEST: gi|29642143|gb|CB647150.1|CB647150
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
EST: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAG GTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
genomic: GCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcct ... ctttctatagGTCCTGAAAACTCCTGTCTCACTTGATATGCTTGGGCGCATTTTTAATGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTTGAAGGCACTTCAGGAATAGACAACAAATATACCACTGTGCAGTTCACAGGAGAGgtaatttcctcttattcatctcttcctccttttatcttcacttcctggtatccatagtgatttaagtgttctaataggttaatcactttgagctgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttcctc