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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTCTCACCAATAGTCTGGAGGGTATGCTTCTTGGAAGATTTTTGGTTGGAACAGGGATGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAGgtatgtaattggtgttatgcacctatgcctcaatctctgattgtctgtatcaaatattaatcttattcatttgtacctttttcttataatcccttggatccag

Basic information

species Oryza sativa
transcript LOC_Os02g17500.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 6
lower sequence: GRMZM2G412899_T01 (Zea mays), 5'ss of exon 1
CGCTCTCACCAATAGTCTGGAGGGTATGCTTCTTGGAAGATTTTTGGTTGGAACAGGGATGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAGgtatgtaattggtgttatgcacctatgcct--------caatctctgattgtctgtat------caaatattaatcttattcatttgtacctttttct---tataatcccttggatccag
 |||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||  |  |||| | |||  ||| ||           ||||  || || |   |      |  |||    | | ||   || ||  || | | |   ||       | | || |||
TGCTCTCTCCAATAGTTTGGAGGGTATGCTCCTTGGAAGATTTTTGGTAGGAACAGGGATGGGATTGGGTCCACCAGTAGCTTCACTTTATATAACGGAGgtatgtagatcctgttttccacaaatgactatcgataatgttctcatatggtttactttctactcggataaagttttcatcagttggtctctgtctatgtctacgtctgatggaatgcag

upper sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 6
lower sequence: Vv09s0002g04380.t01 (Vitis vinifera), 5'ss of exon 5
CGCTCTCACCAATAGTCTGGAGGGTATGCTTCTTGGAAGATTTTTGGTTGGAACAGGGATGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAGgtatgt-aattggtgttatgcacctatgcctcaatctctgattgtctgtatcaaat---attaatcttattcatttgtacctttttcttataatcccttggatccag
 ||    || |  |||||||||||||||||||||||||| ||| | ||||| || || |||||  | || ||||| || | ||| || ||  |  ||||||||||  || || | || |     | |    || | | |  ||| |  |    | |   |||| |  | |    |||| | || | ||  | | |            
TGCAACAACAAGAAGTCTGGAGGGTATGCTTCTTGGAAGGTTTCTTGTTGGGACTGGAATGGGTATTGGCCCACCTGTTGTTTCTCTCTATGTGGCAGAGgtatgagaactgattttttttttttcttttacactat-tagttgacattgctcactccaattattggtgtctgattgtgctttatcctcctgagcag----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29643521|gb|CB648528.1|CB648528
EST:     GAACAGGGATGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAG                         GTTTCTCCTCCTTCAGTGAGGGGCACATATGGGAGCTTTGTTCAGATTGCA
genomic: GAACAGGGATGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAGgtatgtaatt ... ttggatccagGTTTCTCCTCCTTCAGTGAGGGGCACATATGGGAGCTTTGTTCAGATTGCA
EST: gi|88362011|gb|CI607011.1|CI607011
EST:     TGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAG                         GTTTCTCCTCCTTCAGCTGAGGGGCACATATGGGAGCTTTGTTCAGATTGC
genomic: TGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAGgtatgtaatt ... ttggatccagGTTTCTCCTCCTTCAG-TGAGGGGCACATATGGGAGCTTTGTTCAGATTGC
EST: gi|218499348|gb|FG943597.1|FG943597
EST:     GAACAGGGATGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAG                         GTGTCTCCTCCTTCAGTGAGGGGCACATATGGGAGCTTTGTTCAGATTGCA
genomic: GAACAGGGATGGGATTAGGTCCACCAGTAGCTTCACTGTACATAACAGAGgtatgtaatt ... ttggatccagGTTTCTCCTCCTTCAGTGAGGGGCACATATGGGAGCTTTGTTCAGATTGCA