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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttcatatggccatgttgatagcaagcttggttttggaacttgatgatttaccatgtggtattcaggattaacaagcagcaatactctttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACACTATACTTGTTGCTGAATACCTGCTGGGAAAGTCTACCGTGAAAGTTG

Basic information

species Oryza sativa
transcript LOC_Os02g17500.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88255991|gb|CI358379.1|CI358379
EST:     GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG                         ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: gi|86260375|gb|CI066248.1|CI066248
EST:     GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG                         ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGTC
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: gi|88457624|gb|CI537022.1|CI537022
EST:     TCGCTTCTACAAACACAATAAAG                         ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
genomic: TCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: gi|218493904|gb|FG949299.1|FG949299
EST:     GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG                         ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: gi|218498875|gb|FG949815.1|FG949815
EST:     GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG                         ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: gi|86596824|gb|CI270620.1|CI270620
EST:     GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG                         ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
EST: gi|86432622|gb|CI086233.1|CI086233
EST:     GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAG                         ATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC
genomic: GGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGgtgctaatct ... ttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgatttaccatgtggtattcaggattaacaagcagcaatactctttcattgcagATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACACTATACTTGTTGCTGAATACCTGCTGGGAAAGTCTACCGTGAAAGTTG
                       gattaac  putative branch site (score: 2)
                                         ctctttcatt  putative PPT
                        attaacaa  TA-rich tract