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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTGCCTGAGATTTTCCCAAACAAAATACGGGCCAAGGCTATGGCTCTGTGCATGTCCGTGCATTGGgtaaggagttatgtttccatcacaaaaaaaaaaagacactgcatgtctgtgcattggataggagttcatttttcatcctcaaaaaatagacactgcatgt...

Basic information

species Oryza sativa
transcript LOC_Os02g17500.2
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17500.3 (Oryza sativa), 5'ss of exon 13
lower sequence: GRMZM2G412899_T04 (Zea mays), 5'ss of exon 12
TTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTGCCTGAGATTTTCCCAAACAAAATACGGGCCAAGGCTATGGCTCTGTGCATGTCCGTGCATTGGgtaaggagttatgtttccatcacaaaaaaaaaaagacactgcatgt---ctgtgcattggataggagttcatttttcatcctcaaaaaat-agacactgcatgt----
|||  |||||||||| || || ||||||||||||||||||||||||||||| || ||||| || || |||||||||||||| |||||||| || ||||||||||| |        ||||| |   |  | |  || ||| ||||||    |||    |||| | || |     |  ||   |  || ||| | ||| |  ||      
TTCACTAGGAGCAGGCCCTGTCCCAGGACTTCTTTTGCCTGAGATTTTCCCTAATAAAATCCGAGCTAAGGCTATGGCTCTCTGCATGTCTGTACATTGGgtaagaa-------ctccatgagccaggatatcaggcac-gcatgtgaattgttagatggaaaagaataagcataccagtatggaagaattatacattatattatata
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218493904|gb|FG949299.1|FG949299
EST:     CAAACAAAATACGGGCCAAGGCTATGGCTCTGTGCATGTCCGTGCATTGG                         GTGGTAAANNNNNNNGTCAGTTTGTTGTTCTTGCGGCTTCTGGAGCAACTT
genomic: CAAACAAAATACGGGCCAAGGCTATGGCTCTGTGCATGTCCGTGCATTGGgtaaggagtt ... aatgctgcagGTGGTAAATTTTTTTGTCAGTTTGTTGTTCTTGCGGCTTCTGGAGCAACTT
EST: gi|218498875|gb|FG949815.1|FG949815
EST:     CAAACAAAATACGGGCCAAGGCTATGGCTCTGTGCATGTCCGTGCATTGG                         GTGGTAAANNNNNNNGTCAGTTTGTTGTTCTTGCGGCTTCTGGAGCAACTT
genomic: CAAACAAAATACGGGCCAAGGCTATGGCTCTGTGCATGTCCGTGCATTGGgtaaggagtt ... aatgctgcagGTGGTAAATTTTTTTGTCAGTTTGTTGTTCTTGCGGCTTCTGGAGCAACTT