1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATTgtaagttttagaattttatgtcttccgttactttgattctactatctttcaagttatctgaatttagttattaatgtctaggaggctaaactaaatagct...
species | Oryza sativa |
transcript | LOC_Os02g17500.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATT GTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTEST: gi|218493904|gb|FG949299.1|FG949299
genomic: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATTgtaagtttta ... tctttttcagGTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTT
EST: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATT GTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTEST: gi|218498875|gb|FG949815.1|FG949815
genomic: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATTgtaagtttta ... tctttttcagGTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTT
EST: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATT GTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTEST: gi|218496023|gb|FG951379.1|FG951379
genomic: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATTgtaagtttta ... tctttttcagGTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTT
EST: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATT GTTTGTCTTGAC
genomic: CACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATTgtaagtttta ... tctttttcagGTTTGTCTTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATTgtaagttttagaattttatgtcttccgttactttgattctactatctttcaagttatctgaatttagttattaatgtctaggaggctaaactaaatagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG