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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtgcacggttttttctctttttttttccctgcgatttttttttgggtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcagCGAAAATGGCGGACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGG

Basic information

species Oryza sativa
transcript LOC_Os02g17500.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17500.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G412899_T03 (Zea mays), 3'ss of exon 1
gtccgtgcacggttttttctct--ttttttttccctgcgatttttttttgg-gtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcagCGAA-AATGGCGG--ACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGG
|| |||||    | ||| | |   ||  | || ||  || ||  ||| ||| | | |  || | | |  |  ||||    | | |  |   || ||        || |    |||||   ||||| ||  |||||||||||||||||| ||||||| || || ||||||||||||||||| |||||||| || ||         
gttcgtgccgcatgtttcccccggttcctcttaccaccggttaatttatggtgagatttgaatctcatttcattttcccatttccatgtctgcagTGAGAATGACGGACGGCGGCGGCAGCGGCGCGGGGCCGTCGTGGCGCATGTCGTTGCCGCATGTCTGTGTCGCCACGCTCACCTCGTTCCTCTTTGGATA---------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66920526|gb|CX107374.1|CX107374
EST:     GCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAG                         CGAAAATGGCGGACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACG
genomic: GCGCGTGCCGTCCAGGGACGCCGCCATGGATCTCGACGTCGAGACGCCAGgtccgtgcac ... gtttctgcagCGAAAATGGCGGACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggtggtgagattttgaggttttttttttctgtgctcggtggcggtttctgcagCGAAAATGGCGGACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGG
                                              tttctgc  CT-rich tract
                    ttttttttttctgt  TA-rich tract