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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAAAATGGCGGACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgccatccattttctcatttcttcttctggttgtggttgttttcccaactcacggtgtggagcgcgtgcgtgtgattggttggtttggtgcag

Basic information

species Oryza sativa
transcript LOC_Os02g17500.2
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g17500.1 (Oryza sativa), 5'ss of exon 3
lower sequence: GRMZM2G412899_T03 (Zea mays), 5'ss of exon 2
-CGAAAATGGCGG--ACGGCGGGGCCCCGTCGTGGCGCATGTCGCTGCCGCACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgccatccattttctcatttc--ttcttctggttgtggttgttttcccaactcacggtgtggagcgcgtgcgtgtgattggttggtt-tggtgcag
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CGGACGGCGGCGGCAGCGGCGCGGGGCCGTCGTGGCGCATGTCGTTGCCGCATGTCTGTGTCGCCACGCTCACCTCGTTCCTCTTTGGATACCACTCCGGgtgcgtggccttccgcccacgttttcagcacttttgattgctctattgccctcatctgaaagtc--gtgctcatttg-gtgccttgatggtgatgacgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66920526|gb|CX107374.1|CX107374
EST:     CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGG                         GGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGG
genomic: CACGTGTGCGTCGCCACGCTCACCTCCTTCCTCTTCGGCTACCACTCCGGgtgcgtgcca ... tttggtgcagGGTCGTGAACGAGCCGCTCGAGAGCATCTCCACCGACCTCGGCTTCGCCGG