Sequence
atgc intronic sequence ATGC exonic sequencegtttgcagttttctacattccaaaagcatgacgacatgaagttctcaaattcgtcactggtaactgaactttctctgggtttgtgatgcagACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAG
Basic information
species | Oryza sativa |
transcript | LOC_Os01g47410.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g47410.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GLYMA12G31880.1 (Glycine max), 3'ss of exon 9
gtttgcagttttctacattccaaaagcatgacgacatgaagttctcaaattcgtcactggtaactgaactttctctgggtttgtgatgc-----agACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAG
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gtattta--ttattaattttcatatcttttccataattccatccatatattttatacttttaac--aacttttctaaaattcctattatttcatagGCTTTGCCACAACAGATCTGCTCTCAAATTGGTTTATGTACTTTTGATGGTACTCAAGGT-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|2799303|gb|AA752292.1|AA752292EST: CAGTTGTTTCTCAATATGGTCAACAGATCCTAGATCAGCTGCGAGCAGAG ACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGT
genomic: CAGTTGTTTCTCAATATGGTCAACAGATCCTAGATCAGCTGCGAGCAGAGgtttgcagtt ... tgtgatgcagACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaagttctcaaattcgtcactggtaactgaactttctctgggtttgtgatgcagACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAG
tggtaac putative branch site (score: 2)
tcaaatt TA-rich tract