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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAGgtaagatttgtggatttgctgttttttagatattgggaactgtccagcctctacagttgtgggtttactgtggatggataattgaatgcgtagcatttta...

Basic information

species Oryza sativa
transcript LOC_Os01g47410.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g47410.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA12G31880.1 (Glycine max), 5'ss of exon 10
ACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAGgtaagatttg-tggatttgctgttttttagatattgggaactgtccagcctctacagttgtgggtttactgtgga---tggataattgaatgcgtagcatttta------------------------------------
 |    |||    |  | ||||||    | |||||||||||||||||||||||||| ||||| ||||| ||| || |  |  |  ||| || | ||||   | |  ||      |  |   |||||   |  |  |   |   | || || |       ||  ||||||                                    
GCTTTGCCACAACAGATCTGCTCTCAAATTGGTTTATGTACTTTTGATGGTACTCAAGGTgtaaggtatgatctgatcaacctattgtgttct-gataaatgcatttggatgatcaattgtgttgtacatgaaaggaaaaatattgacaaattctcctataa-attttagtattggcatccagagtgtggttgataaaaacatag

upper sequence: LOC_Os01g47410.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA15G11670.1 (Glycine max), 5'ss of exon 9
ACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAGgtaagatttgtggatttgctgttttttag-atattgggaactgtccagcctctacagttgtgggtttactgtggatggataattgaatgcgtagcatttta----
 |||| |||   ||  | |||||     | || || ||||| |||||||| |||||||||||||||||||    |  ||| |  ||  ||||   |||      ||  |  | | | |  | | ||    | | ||    |  || |  || |    |   ||       
GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaag-cccgaagatattatgccttttgtcatagcttagacgctttaacatatttaat-gttctctgattgccattttattaaagagtttcaatttttcctctag

upper sequence: LOC_Os01g47410.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA09G00810.1 (Glycine max), 5'ss of exon 9
ACAAAACCAGCGAAAGTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAGgtaagatttgtggatttgctgttttttagatattgg---gaactgtccagcctctacagttgtgggtttactgtggatgga---taattgaatgcgtagcatttta-------
 |||| |||   ||  | |||||     | || || ||||| |||||||| |||||||||||||||||| |   |  ||| |  |   || | |  ||| |     |   |  | | | |  | |  || || | ||||   |  |   | ||||||    |   |||||        
GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGgtaa-acccgaagatattgtaccttct-gtcattagcctagaggctttaacatatttaatgttgagtgttctgtaatttcaattttattgaagagtttcaatttttcctttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|2799303|gb|AA752292.1|AA752292
EST:     GTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAG                         TGCTGGTATTCGGAGTGTGGTGGATGATGAAGTTGGAAAATCAAGTGGTCC
genomic: GTATGCTCTTCGGTCGGTTTATGTACTTTTGATGGTACTCATGGTGTTAGgtaagatttg ... gtaatggcagTGCTGGTATTCGGAGTGTGGTGGATGATGAAGTTGGAAAATCAAGTGGTCC