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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTATGGGAGAATCATCTGTTGACTGCAGCAGCCTTGCATCCATGCCTGACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttcttctctatgactcttatgctgtcttttcttgggaattgcatccatattagctcttaagctcaggaattgttgtttgcatattttaagattg...

Basic information

species Oryza sativa
transcript LOC_Os01g47410.2
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86837657|gb|CI345830.1|CI345830
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTT-GTGAGGGAACTG-TACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88848279|gb|CI086801.1|CI086801
EST:     CCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: CCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88961195|gb|CI096599.1|CI096599
EST:     CTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: CTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|89162364|gb|CI104692.1|CI104692
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|66919051|gb|CX105899.1|CX105899
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTGCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|86490999|gb|CI133632.1|CI133632
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|86823254|gb|CI254102.1|CI254102
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88990622|gb|CI108009.1|CI108009
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88260092|gb|CI361593.1|CI361593
EST:     TTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: TTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|89175124|gb|CI111643.1|CI111643
EST:     ACATTGCCTTCACGATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|89163381|gb|CI100271.1|CI100271
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88262487|gb|CI366261.1|CI366261
EST:     ACATTGCCTTCACAATCGCTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|89174577|gb|CI110775.1|CI110775
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACGA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|89174564|gb|CI110762.1|CI110762
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88512430|gb|CI439936.1|CI439936
EST:     ACATTGCCTTCACAATCGGGGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGNTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88967838|gb|CI098080.1|CI098080
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|15849953|gb|BI798229.1|BI798229
EST:     ACATTGCCTTCACAATCGGT-GCAACAAGTTTGTGCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88525445|gb|CI453986.1|CI453986
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|15847030|gb|BI795306.1|BI795306
EST:     CATTGCCTTTCACAATCGGTGGCAACAAGTTTGTGCTCAAACCAG-ACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: CATTGCC-TTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|2799539|gb|AA752528.1|AA752528
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|86485963|gb|CI128596.1|CI128596
EST:     CCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: CCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|15848544|gb|BI796820.1|BI796820
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTGCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|86491950|gb|CI134583.1|CI134583
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|89165697|gb|CI102787.1|CI102787
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCTCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATT
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATC-CTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATT
EST: gi|86428765|gb|CI075446.1|CI075446
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|86435036|gb|CI106269.1|CI106269
EST:     CATTGCCTTGCACAATCGGTGGCCACAAGTTTGTTCTCAAACCAGGACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: CATTGCCTT-CACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88835718|gb|CI370823.1|CI370823
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88251440|gb|CI349868.1|CI349868
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGTTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88289223|gb|CI553199.1|CI553199
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88515707|gb|CI443361.1|CI443361
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGGACAA                         TACATCCTGAAGGGTTGGTGAGGGAACTGGTACCCAGTGCATCAGTGGATT
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAA-GGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATT
EST: gi|88956423|gb|CI092685.1|CI092685
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|3762082|gb|C99330.1|C99330
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TNCATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88468051|gb|CI517510.1|CI517510
EST:     CATTGCCTTCACAATCGGTGGCCACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: CATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|15849091|gb|BI797353.1|BI797353
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTGCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|86485865|gb|CI128498.1|CI128498
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88551666|gb|CI481744.1|CI481744
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|86492539|gb|CI135172.1|CI135172
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|86483624|gb|CI126257.1|CI126257
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGGACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|88262344|gb|CI366118.1|CI366118
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|89162553|gb|CI099245.1|CI099245
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACAACCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|89165391|gb|CI102481.1|CI102481
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|86489443|gb|CI132076.1|CI132076
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCGTCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
EST: gi|89181833|gb|CI113339.1|CI113339
EST:     ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAA                         TACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC
genomic: ACATTGCCTTCACAATCGGTGGCAACAAGTTTGTTCTCAAACCAGAACAAgtacgtttct ... ccctattcagTACATCCTGAAGGTTGGTGAGGGAACTGCTACCCAGTGCATCAGTGGATTC