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gttgatctcattttgaagttggttgggtatgttttaaatttcaatattgatagcaatggtctgtgctgataaaattatcatttactttctgaagTTCAATATGGGCGATGTCCTAATTGGAGGGAATTCCACAG
species | Oryza sativa |
transcript | LOC_Os01g47410.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGGAAATCATACATATGTCCCTGTCACTAGGAAGGGATACTGGCAG TTCAATATGGGCGATGTCCTAATTGGAGGGAATTCCACAGEST: gi|2799301|gb|AA752290.1|AA752290
genomic: ACAAGGGAAATCATACATATGTCCCTGTCACTAGGAAGGGATACTGGCAGgttgatctca ... ctttctgaagTTCAATATGGGCGATGTCCTAATTGGAGGGAATTCCACAG
EST: ACAAGGGAAATCATACATATGTCCCTGTCACTAGGAAGGGATACTGGCAG TTCAATATGGGCGATGTCCTAATTGGAGGGAATTCCACAG
genomic: ACAAGGGAAATCATACATATGTCCCTGTCACTAGGAAGGGATACTGGCAGgttgatctca ... ctttctgaagTTCAATATGGGCGATGTCCTAATTGGAGGGAATTCCACAG
ttcaatattgatagcaatggtctgtgctgataaaattatcatttactttctgaagTTCAATATGGGCGATGTCCTAATTGGAGGGAATTCCACAG
tgctgat putative branch site (score: 3)
tttactttct putative PPT
tgataaaattatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgatctcattttgaagttggttgggtatgttttaaatttcaatattgatagcaatggtctgtgctgataaaattatcatttactttctgaagTTCAATATGGGCGATGTCCTAATTGGAGGGAATTCCACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG