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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttcctagcttgtaagagcaacgctgcagtgcattattatacaaactgtgtgtaacttttccaaccttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGCAGCCTTGCATCCATGCCTGACATTGCCTTCACAATCGGTGGCAACAAGT

Basic information

species Oryza sativa
transcript LOC_Os01g47410.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|66919051|gb|CX105899.1|CX105899
EST:     AACTTGCACAAAATCAAACTCAGGATCTCGTACTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|86823254|gb|CI254102.1|CI254102
EST:     AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAG                         CTATGTGACCGTC-TCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|88990622|gb|CI108009.1|CI108009
EST:     GATCTCGTATTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: GATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|89175124|gb|CI111643.1|CI111643
EST:     AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|89163381|gb|CI100271.1|CI100271
EST:     CAGTACATTGATAAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: CAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|88262487|gb|CI366261.1|CI366261
EST:     TGCACAAAAGCAAACTCA-GATCTCGTATTGCAGTACA-TGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: TGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|88525445|gb|CI453986.1|CI453986
EST:     ATCTCGTATTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: ATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|2799539|gb|AA752528.1|AA752528
EST:     AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|15848544|gb|BI796820.1|BI796820
EST:     -ACTTGCAC-AAATCAAACTCAGGATCTCGTACTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCA-C
genomic: AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|86491950|gb|CI134583.1|CI134583
EST:     AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|88289223|gb|CI553199.1|CI553199
EST:     ATCTCGTATTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: ATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|3762082|gb|C99330.1|C99330
EST:     TTGCACAAATTCAACCTCGGGNATCTCGTATTGCAGTACATTGANCAG                         CTATGTGACCGTCTNCCTAGTCCTATGGGAG-ATCATCTGTTGACTGCAGC
genomic: TTGCACAAAATCAAACTCAGG-ATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|15849091|gb|BI797353.1|BI797353
EST:     CAGGATCTTCGTACCTGCAGGTACATTGATCAG                         C
genomic: CAGGATC-TCGTA-TTGCA-GTACATTGATCAGgtttgtttcc ... accttcacag-
EST: gi|15849091|gb|BI797353.1|BI797353
EST:     CAGGATCTTCGTACCTGCAGGTACATTGATCAG                         C
genomic: CAGGATC-TCGTA-TTGCA-GTACATTGATCAGgtttgtttcc ... accttcacag-
EST: gi|86483624|gb|CI126257.1|CI126257
EST:     AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
genomic: AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC
EST: gi|88262344|gb|CI366118.1|CI366118
EST:     AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAG                         CTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCTTCTGTTGACTGCACC
genomic: AACTTGCACAAAATCAAACTCAGGATCTCGTATTGCAGTACATTGATCAGgtttgtttcc ... accttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caacgctgcagtgcattattatacaaactgtgtgtaacttttccaaccttcacagCTATGTGACCGTCTTCCTAGTCCTATGGGAGAATCATCTGTTGACTGCAGCAGCCTTGCATCCATGCCTGACATTGCCTTCACAATCGGTGGCAACAAGT
                               gtgtaac  putative branch site (score: 3)
                                     cttttccaaccttc  CT-rich tract
              attattatacaaact  TA-rich tract