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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatgtgcgttaaatctgtatctgttctgatgtgtccttggatttaaactgcaacagggtgttaagttcatgaatataatttatcagttctccttggcagGAAAACCTGCTTCAATTCATTATGGAACGGGTGCAATTTCTGGCTATTTTAGTCAGGACAGTGTGAAAGTTGGTGATGTAGCTGTGAAAAATCAG

Basic information

species Oryza sativa
transcript LOC_Os01g47410.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|1631900|gb|C19629.1|C19629
EST:     CTTCCACTCGAGGTACAAGGCTGGTCAGTCGAGCACGTATAAGAAGAATG                         GAAAACCTGCTTCAATTCATTATGGAACGGGTGCAATTTCTGGCTATTTTA
genomic: CTTCCACTCGAGGTACAAGGCTGGTCAGTCGAGCACGTATAAGAAGAATGgtttgtgctt ... tccttggcagGAAAACCTGCTTCAATTCATTATGGAACGGGTGCAATTTCTGGCTATTTTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactgcaacagggtgttaagttcatgaatataatttatcagttctccttggcagGAAAACCTGCTTCAATTCATTATGGAACGGGTGCAATTTCTGGCTATTTTAGTCAGGACAGTGTGAAAGTTGGTGATGTAGCTGTGAAAAATCAG
                                          ttctcctt  CT-rich tract
                ttaagttcatgaatat  TA-rich tract