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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgcaagacactcgtatttctggtgtactcctttttacacgctaatggataatttactttgcttaccttgcagCTATTTGCTTCCAGAACTTGATGTGCCTTGCACTTTGAGAATAAATTATTCAGCACATACTGTTCTAAATGTCAAGTTTCAAAGTCACAGGAGTAG

Basic information

species Oryza sativa
transcript LOC_Os01g43170.2
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58678954|gb|CK067641.1|CK067641
EST:     TGCATTCCTAG                         CTATTTGCTTCCAGAACTTGATGTGCCTTGCACTTTGAGAATAAATTGTTC
genomic: TGCATTCCTAGgtattttgca ... taccttgcagCTATTTGCTTCCAGAACTTGATGTGCCTTGCACTTTGAGAATAAATTATTC
EST: gi|58655600|gb|CK044280.1|CK044280
EST:     AAACTGCATCATCTGCCAGGAGCTGCTCTGGATGGTAGATGCATTCCTAG                         CTATTTGCTTCCAGAACTTGATGTGCCTTGCACTTTGAGAATAAATTATTC
genomic: AAACTGCATCATCTGCCAA-AGCTGCTCTGGATGGTAGATGCATTCCTAGgtattttgca ... taccttgcagCTATTTGCTTCCAGAACTTGATGTGCCTTGCACTTTGAGAATAAATTATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctggtgtactcctttttacacgctaatggataatttactttgcttaccttgcagCTATTTGCTTCCAGAACTTGATGTGCCTTGCACTTTGAGAATAAATTATTCAGCACATACTGTTCTAAATGTCAAGTTTCAAAGTCACAGGAGTAG
                                         tgcttac  putative branch site (score: 2)
                                      ctttgctt  CT-rich tract
                        taatggataattta  TA-rich tract