1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTCAACAGCAAGAGTTCAGGGGAAGCTGCAGGCAATGTTTTGCTAGTGTCGATGGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTGgtaaggaaaataagaattacagtggggtttattcttttaattttgttcagttcatgtttgtatgcaggaatatatttatttaccaggactgtgttagtaacttgtagtccattttttcgcatctgaatggattag
species | Oryza sativa |
transcript | LOC_Os01g43170.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGATGGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTG --G-CCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGEST: gi|29681003|gb|CB677278.1|CB677278
genomic: CGATGGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTGgtaaggaaaa ... aatggattagCAGGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG
EST: CGATGGAAGGTGTTCTGCCACATGCTGTGAGCATCGATGTTCTACACCTG --G-CCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGEST: gi|58655600|gb|CK044280.1|CK044280
genomic: CGATGGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTGgtaaggaaaa ... aatggattagCAGGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG
EST: GGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCT- --GGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG
genomic: GGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTGgtaaggaaaa ... aatggattagCAGGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTCAACAGCAAGAGTTCAGGGGAAGCTGCAGGCAATGTTTTGCTAGTGTCGATGGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTGgtaaggaaaataagaattacagtggggtttattcttttaattttgttcagttcatgtttgtatgcaggaatatatttatttaccaggactgtgttagtaacttgtagtccattttttcgcatctgaatggattag
- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG