1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgaggttccttcgtttcgtcgtcatcgcgcggtattgtcctgcgtttgccgattttttgctgacgtgatggtgtggcgtggcgtgggtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGCTTCCGGGCAGCCGCAGTTCAGGTACACGCAGCCGCCGTCGAAGGTGAT
species | Oryza sativa |
transcript | LOC_Os01g43170.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88392333|gb|CI612807.1|CI612807
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88434195|gb|CI589260.1|CI589260
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|58672532|gb|CK061218.1|CK061218
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCTCAGACTCGCAGCTCTCGCAAAG ATTGA----C--GG--GCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88359026|gb|CI619530.1|CI619530
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGAAGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88360620|gb|CI620355.1|CI620355
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88402140|gb|CI614983.1|CI614983
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88372229|gb|CI619559.1|CI619559
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88401991|gb|CI593703.1|CI593703
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTTGACGGGCGAGGAAGCGAGGAGTGCGTATCTTGGGTGGGTGCGGGGATEST: gi|88723827|gb|CI745524.1|CI745524
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagA-TTGACGGGCGAGGAAGCGAGGAG-GCGTATCTTGGGTGGGTGCGGGGAT
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88399395|gb|CI606016.1|CI606016
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88417614|gb|CI581637.1|CI581637
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88311840|gb|CI577446.1|CI577446
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88394784|gb|CI622658.1|CI622658
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88371532|gb|CI602710.1|CI602710
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88393225|gb|CI616709.1|CI616709
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88397912|gb|CI583230.1|CI583230
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88694575|gb|CI738613.1|CI738613
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88337084|gb|CI628170.1|CI628170
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88717456|gb|CI740966.1|CI740966
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88350834|gb|CI619092.1|CI619092
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|29681003|gb|CB677278.1|CB677278
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCGGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|88311951|gb|CI577557.1|CI577557
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAG ATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGEST: gi|58611208|gb|CK038920.1|CK038920
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
EST: TTCCCATCGCCGCCACCGCCGGCGGTCTCAGACTCGCAGCTCTCGCAAAG ATTGA----C--GG--GCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
genomic: TTCCCATCGCCGCCACCGCCGGCGGTCGCAGACTCGCAGCTCTCGCAAAGgtgaggttcc ... gtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGG
gcgtttgccgattttttgctgacgtgatggtgtggcgtggcgtgggtggggcaagATTGACGGGCGAGGAAGCGAGGAGGCGTATCTTGGGTGGGTGCGGGGATGGCTTCCGGGCAGCCGCAGTTCAGGTACACGCAGCCGCCGTCGAAGGTGAT
tgctgac putative branch site (score: 2)
atttttt TA-rich tract