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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACGGAGGAGGAGCTGGTCGAGCTCGGGAGCCCCTTCGGCAAGGTCGTCAACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatccgtctcctttctgtatttgtggattgcaaaaacgatttgtcacatgtataaaattattaatcggtggttttggagttaggcttttttagct...

Basic information

species Oryza sativa
transcript LOC_Os01g43170.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88401621|gb|CI588562.1|CI588562
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGGTATGATA
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATA
EST: gi|88392333|gb|CI612807.1|CI612807
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88434195|gb|CI589260.1|CI589260
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|58672532|gb|CK061218.1|CK061218
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88359026|gb|CI619530.1|CI619530
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88360620|gb|CI620355.1|CI620355
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88402140|gb|CI614983.1|CI614983
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88372229|gb|CI619559.1|CI619559
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88401991|gb|CI593703.1|CI593703
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTTGCTATGATATCATATTTTGCATCATCAGC
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATT-GCTATGATATCATATTTTGCATCATCAGC
EST: gi|88399395|gb|CI606016.1|CI606016
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88417614|gb|CI581637.1|CI581637
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGACAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88311840|gb|CI577446.1|CI577446
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88394784|gb|CI622658.1|CI622658
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88371532|gb|CI602710.1|CI602710
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCAT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCAT
EST: gi|88393225|gb|CI616709.1|CI616709
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88397912|gb|CI583230.1|CI583230
EST:     ACGCGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCGATTGCTATGATATCATATTTTGCATCAT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCAT
EST: gi|88337084|gb|CI628170.1|CI628170
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88717456|gb|CI740966.1|CI740966
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTG
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTG
EST: gi|88350834|gb|CI619092.1|CI619092
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCAT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCAT
EST: gi|29681003|gb|CB677278.1|CB677278
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|88311951|gb|CI577557.1|CI577557
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
EST: gi|58611208|gb|CK038920.1|CK038920
EST:     ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTC                         GCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT
genomic: ACACGAAATGCAACGTCGGCGCCAACCGGAACCAGGCCTTCGTCGAATTCgtgagtatcc ... tctgttgcagGCTGACCAAAATCAGGCAATTGCTATGATATCATATTTTGCATCATCAGCT