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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgctatagtcagtgtgtaagcatactaaacattacagcattcagaagtttcagaatttacaaataatacatgctccgtttgtggtggatgacatgatcaagtgatctgctttcagGTTAACAATGAGCGTGGTAGAGATTACACTGGAGGGAACACTGCACCGACCAGCAATCAACCTTCCATTCTTGGTCCTCAACCAGTATATTCCGGTGCTT

Basic information

species Oryza sativa
transcript LOC_Os01g43170.2
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58588477|gb|CF986785.1|CF986785
EST:     ATTGCAAGCTTCATCTCACATTTTCGCGCCATACCGATCTTAATGTGAAG                         GTTAACAATGAGCGTGGTAGAGATTACACTGGAGGGAA
genomic: ATTGCAAGCTTCATCTCACATTTTCGCGCCATACCGATCTTAATGTTAAGgtaattgcta ... ctgctttcagGTTAACAATGAGCGTGGTAGAGATTACACTGGAGGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaataatacatgctccgtttgtggtggatgacatgatcaagtgatctgctttcagGTTAACAATGAGCGTGGTAGAGATTACACTGGAGGGAACACTGCACCGACCAGCAATCAACCTTCCATTCTTGGTCCTCAACCAGTATATTCCGGTGCTT
                                            tctgctttc  CT-rich tract