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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaaaataagaattacagtggggtttattcttttaattttgttcagttcatgtttgtatgcaggaatatatttatttaccaggactgtgttagtaacttgtagtccattttttcgcatctgaatggattagCAGGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACAT

Basic information

species Oryza sativa
transcript LOC_Os01g43170.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672532|gb|CK061218.1|CK061218
EST:     CGATGGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTG                         --G-CCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG
genomic: CGATGGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTGgtaaggaaaa ... aatggattagCAGGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG
EST: gi|29681003|gb|CB677278.1|CB677278
EST:     CGATGGAAGGTGTTCTGCCACATGCTGTGAGCATCGATGTTCTACACCTG                         --G-CCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG
genomic: CGATGGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTGgtaaggaaaa ... aatggattagCAGGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG
EST: gi|58655600|gb|CK044280.1|CK044280
EST:     GGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCT-                         --GGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG
genomic: GGAAGGTGTTCTGCCAGATGCTGTGAGCATCGATGTTCTACACCTGgtaaggaaaa ... aatggattagCAGGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccaggactgtgttagtaacttgtagtccattttttcgcatctgaatggattagCAGGCCATTGTCACGGAGTTTCATGGCATCCTGGCAGGCTACTGCATCCGGAACACAT
              tagtaac  putative branch site (score: 1)
                              atttttt  TA-rich tract