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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTTCTGCTTTTGGCTTTGTTCAAAAGATTGCCACCTTTGAGAAGGCATCTGGTTATCAGgtaacggttttacttttactagagtattttggtaacatgtcttatctggtcgctgtcctggttgattttatctgagttatgtttccctggcttgtag

Basic information

species Oryza sativa
transcript LOC_Os01g43170.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672532|gb|CK061218.1|CK061218
EST:     TTGGCTTTGTTCAAAAGATTGCCACCTTTTAGAAGGCATCTGGTTATCAG                         GCATTGATACAGTTCTGTGATACTGAAA
genomic: TTGGCTTTGTTCAAAAGATTGCCACCTTTGAGAAGGCATCTGGTTATCAGgtaacggttt ... tggcttgtagGCATTGATACAGTTCTGTGATACTGAAA
EST: gi|29681003|gb|CB677278.1|CB677278
EST:     TGGCTTTGTGTCAAA-GATTGCCACCTTTGAGAAAGCATCTGGTTATCAG                         GCATTGATACAGTTCTGTGATACTGAAACTGCATCATCTGCCAAAGCTGCT
genomic: TGGCTTTGT-TCAAAAGATTGCCACCTTTGAGAAGGCATCTGGTTATCAGgtaacggttt ... tggcttgtagGCATTGATACAGTTCTGTGATACTGAAACTGCATCATCTGCCAAAGCTGCT
EST: gi|58655600|gb|CK044280.1|CK044280
EST:     TTGGCTTTGTTCAAAAGATTGCCACCTTTGAGAAGGCATCTGGTTATCAG                         GCATTGATACAGTTCTGTGATACTGAAACTGCATCATCTGCCAGGAGCTGC
genomic: TTGGCTTTGTTCAAAAGATTGCCACCTTTGAGAAGGCATCTGGTTATCAGgtaacggttt ... tggcttgtagGCATTGATACAGTTCTGTGATACTGAAACTGCATCATCTGCCAA-AGCTGC