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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgacacttgcatcggcgtaattatactatttcttgcagaaataaaaggataaccgtaaggtctgtagtttacacaaacgagtggttattttttgacagGTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTG

Basic information

species Oryza sativa
transcript LOC_Os01g36080.4
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29625169|gb|CB630180.1|CB630180
EST:     AAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTCTTCAG                         GTCACCCGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA
genomic: AAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTCTTCAGgtgctagctt ... tttttgacagGTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA
EST: gi|29676790|gb|CB673065.1|CB673065
EST:     AAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTCTTCAG                         GTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA
genomic: AAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTCTTCAGgtgctagctt ... tttttgacagGTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA
EST: gi|29663423|gb|CB659698.1|CB659698
EST:     AAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTCTTCAG                         GTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA
genomic: AAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTCTTCAGgtgctagctt ... tttttgacagGTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA
EST: gi|86500133|gb|CI142766.1|CI142766
EST:     AAGTCAAATGGCCAATAGATACATGGCGTGTTGGTGCACCTGCTCTTCAG                         GTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA
genomic: AAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTCTTCAGgtgctagctt ... tttttgacagGTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA
EST: gi|88219801|gb|CI219361.1|CI219361
EST:     GTGCAGCTGCTCTTCAG                         GTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA
genomic: GTGCAGCTGCTCTTCAGgtgctagctt ... tttttgacagGTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaggataaccgtaaggtctgtagtttacacaaacgagtggttattttttgacagGTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTG
   ggataac  putative branch site (score: 3)
                                         ttatttttt  putative PPT
                                         ttattttttga  TA-rich tract