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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGGCTCTCCAATACCTAAACATCCTTGGCATAGTACACAGAGATATAAAGCCTGCAAACATTTTGgtaattttgtcttctatattgaatgatttaagttctacacataatgcatttctacatacattaacaaagtctaataattgtgtacag

Basic information

species Oryza sativa
transcript LOC_Os01g36080.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g36080.1 (Oryza sativa), 5'ss of exon 4
lower sequence: GRMZM2G006554_T01 (Zea mays), 5'ss of exon 1
----------------------------CAAAGGCTCTCCAATACCTAAACATCCTTGGCATAGTACACAGAGATATAAAGCCTGCAAACATTTTGgta---------attttgtct---tctatattgaatgatttaagttctacacataatgcatttcta--------catacattaacaaagtctaataattgtgtacag
                            |||||||||||||||||||| | ||||||||  ||||||||||||||||||| ||||| || |||||||||         |||||   |   ||| | | |||| || |   |||||  || ||   ||||| |        ||| |||| |   |  || |||| | |||||||
CATACCATTTTGCACGATATCTTTGCAGCAAAGGCTCTCCAATACCTACAAATCCTTGGGGTAGTACACAGAGATATAAAACCTGCGAATATTTTGgtatgtgcaaacatttttcttatatctgtgtagaatcatgtgc-ttctaagcagaacagatttccatctttttccatgcatttatggaagcttataactttgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33678097|gb|CF306336.1|CF306336
EST:     TAAACATCCTTGGCATAGTACACAGAGATATAAAGCCTGCAAACATTTTG                         ATAGATAAGGACTTCCATCCACATTTAGCAGATTTTGGCTTAGCCATGTAC
genomic: TAAACATCCTTGGCATAGTACACAGAGATATAAAGCCTGCAAACATTTTGgtaattttgt ... ttgtgtacagATAGATAAGGACTTCCATCCACATTTAGCAGATTTTGGCTTAGCCATGTAC
EST: gi|33678822|gb|CF307061.1|CF307061
EST:     TAAACATCCTTGGCATAGTACACAGAGATATAAAGCCTGCAAACATTTTG                         ATAGATAAGGACTTCCATCCACATTTAGCAGATTTTGGCTTAGCCATGTAC
genomic: TAAACATCCTTGGCATAGTACACAGAGATATAAAGCCTGCAAACATTTTGgtaattttgt ... ttgtgtacagATAGATAAGGACTTCCATCCACATTTAGCAGATTTTGGCTTAGCCATGTAC