1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gccctgtattagctttaattacgtatataatgccattgctgaagcaaacatgtgagatacactattttctacaattgggaactcattgatttttctctagGCACACACCGTTCTTGAAATGACTTACACCGAACAACAACTTACAGCAGCAATTGTTTCTCAAGGATTGCGCCCAGCTCTTGCCCTTCCTGAGTCTGGTG
species | Oryza sativa |
transcript | LOC_Os01g36080.4 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACGAGCAGAAGCACAG GCACACACCGTTCTTGAAATGACTTACACCGAACAACAACTTACAGCAGCAEST: gi|33678822|gb|CF307061.1|CF307061
genomic: TACGAGCAGAAGCACAGgtacgtattt ... ttttctctagGCACACACCGTTCTTGAAATGACTTACACCGAACAACAACTTACAGCAGCA
EST: GCTACTTACGNGGTGTGGTGCCTTATACAGACCTACGAGCAGAAGCACAG GCACACACCGTTCTTGAAATGACTTACACCGAACAAACA-CTTACAGCAGC
genomic: GCTACTTACG-GGTGTGGTGCCTTATACAGACCTACGAGCAGAAGCACAGgtacgtattt ... ttttctctagGCACACACCGTTCTTGAAATGACTTACACCGAACAA-CAACTTACAGCAGC
aaacatgtgagatacactattttctacaattgggaactcattgatttttctctagGCACACACCGTTCTTGAAATGACTTACACCGAACAACAACTTACAGCAGCAATTGTTTCTCAAGGATTGCGCCCAGCTCTTGCCCTTCCTGAGTCTGGTG
cattgat putative branch site (score: 4)
tttttctct CT-rich tract
tattttctacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctgtattagctttaattacgtatataatgccattgctgaagcaaacatgtgagatacactattttctacaattgggaactcattgatttttctctagGCACACACCGTTCTTGAAATGACTTACACCGAACAACAACTTACAGCAGCAATTGTTTCTCAAGGATTGCGCCCAGCTCTTGCCCTTCCTGAGTCTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC