1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtccgcataatatttcttctttattttgcacgcttcttgaaatttaagcattataacataagatatgttttcattctgccttggtagGATCATGTTGCTAGTTGTCCAAAGGAAAGAGAACGGATTGTAAAGGAAGGAACTGAAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTC
species | Oryza sativa |
transcript | LOC_Os01g36080.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTGCCGGGCAATTCTGAACCGTGCTGGTGAACCATTTCCTATGACCAGG GATCATGTTGCTAGTTGTCCAAAGGAAAGAGAACGGATTGTAAAGGAAGGAEST: gi|29663423|gb|CB659698.1|CB659698
genomic: ATTGCCGGGCAATTCTGAACCGTGCTGGTGAACCATTTCCTATGACCAGGgtccgcataa ... gccttggtagGATCATGTTGCTAGTTGTCCAAAGGAAAGAGAACGGATTGTAAAGGAAGGA
EST: ATTGCCGGGCAATTCTGAACCGTGCTGGTGAACCATTTCCTATGACCAGG GATCATGTTGCTAGTTGTCCAAAGGAAAGAGAACGGATTGTAAAGGAAGGAEST: gi|29617856|gb|CB622868.1|CB622868
genomic: ATTGCCGGGCAATTCTGAACCGTGCTGGTGAACCATTTCCTATGACCAGGgtccgcataa ... gccttggtagGATCATGTTGCTAGTTGTCCAAAGGAAAGAGAACGGATTGTAAAGGAAGGA
EST: ATTGCCGGGCAATTCTGAACCGTGCTGGTGAACCATTTCCTATGACCAGN GATCATGTTGCTAGTTGTCCAAAGGAAAGAGAACGGATTGTAAAG
genomic: ATTGCCGGGCAATTCTGAACCGTGCTGGTGAACCATTTCCTATGACCAGGgtccgcataa ... gccttggtagGATCATGTTGCTAGTTGTCCAAAGGAAAGAGAACGGATTGTAAAG
cttcttgaaatttaagcattataacataagatatgttttcattctgccttggtagGATCATGTTGCTAGTTGTCCAAAGGAAAGAGAACGGATTGTAAAGGAAGGAACTGAAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTC
ttataac putative branch site (score: 2)
ttttcattctgcctt putative PPT
aaatttaagcattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccgcataatatttcttctttattttgcacgcttcttgaaatttaagcattataacataagatatgttttcattctgccttggtagGATCATGTTGCTAGTTGTCCAAAGGAAAGAGAACGGATTGTAAAGGAAGGAACTGAAGTCAAATGGCAAATAGATACATGGCGTGTTGGTGCAGCTGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT