1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtctacaactcaacaattgacaatgttctttactaacttttgcattaccatatcttacaccacaatttctacagGTTCAGCAGCTGCTGAGTTCTCAGTTCGAGCAGTCCCTGGTTTTCTCAAACAGTTTAATTCCAATACAAG
species | Oryza sativa |
transcript | LOC_Os01g36080.4 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GAGCGAAGAAAAGGATCTGCATGCATTTGGCATTTTTGATGGTCACAGAG GTTCAGCAGCTGCTGAGEST: gi|29676790|gb|CB673065.1|CB673065
genomic: GAGCGAAGAAAAGGATCTGCATGCATTTGGCATTTTTGATGGTCACAGAGgtctacaact ... atttctacagGTTCAGCAGCTGCTGAG
EST: GAGCGAAGAAAAGGATCTGCATGCATTTGGCATTTTTGATGGTCACAGAG GTTCAGCAGCTGCTGAGTTCTCAGTTCGAGCAGTCCCTGGATTTTCTCAAAEST: gi|29617856|gb|CB622868.1|CB622868
genomic: GAGCGAAGAAAAGGATCTGCATGCATTTGGCATTTTTGATGGTCACAGAGgtctacaact ... atttctacagGTTCAGCAGCTGCTGAGTTCTCAGTTCGAGCAGTCCCTGG-TTTTCTCAAA
EST: GAGCGAAGAAAAGGATCTGCATGCATTTGGCATTTTTGATGGTCACAGAG GTTCAGCAGCTGCTGAGTTCTCAGTTCGAGCAGTCCCTGGTTTTCTCAAAC
genomic: GAGCGAAGAAAAGGATCTGCATGCATTTGGCATTTTTGATGGTCACAGAGgtctacaact ... atttctacagGTTCAGCAGCTGCTGAGTTCTCAGTTCGAGCAGTCCCTGGTTTTCTCAAAC
acaatgttctttactaacttttgcattaccatatcttacaccacaatttctacagGTTCAGCAGCTGCTGAGTTCTCAGTTCGAGCAGTCCCTGGTTTTCTCAAACAGTTTAATTCCAATACAAG
tttctac CT-rich tract
tttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctacaactcaacaattgacaatgttctttactaacttttgcattaccatatcttacaccacaatttctacagGTTCAGCAGCTGCTGAGTTCTCAGTTCGAGCAGTCCCTGGTTTTCTCAAACAGTTTAATTCCAATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG