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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACACGGTCCATTGGCGATGATGATCTTAAGCCAGCAGTCACAGCACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTGgtatgtccattttgtttctctcatctgtgcggtttctttcattctcatacatcaatttgttatatcttagaataccaaagctaacaccagtgtggcataa...

Basic information

species Oryza sativa
transcript LOC_Os01g36080.4
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88506325|gb|CI433831.1|CI433831
EST:     ACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTG                         GTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
genomic: ACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTGgtatgtccat ... ttacctgtagGTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
EST: gi|29625169|gb|CB630180.1|CB630180
EST:     CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTG                         GTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
genomic: CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTGgtatgtccat ... ttacctgtagGTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
EST: gi|29676790|gb|CB673065.1|CB673065
EST:     CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTG                         GTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
genomic: CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTGgtatgtccat ... ttacctgtagGTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
EST: gi|29663423|gb|CB659698.1|CB659698
EST:     CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTG                         GTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
genomic: CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTGgtatgtccat ... ttacctgtagGTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
EST: gi|86500133|gb|CI142766.1|CI142766
EST:     CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTG                         GTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
genomic: CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTGgtatgtccat ... ttacctgtagGTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
EST: gi|88219801|gb|CI219361.1|CI219361
EST:     CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTG                         GTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG
genomic: CACAACCTGAGGTTATAGAAACCATTTTATCACCTGATGATGAGTTCCTGgtatgtccat ... ttacctgtagGTGATGGCAAGTGATGGATTGTGGGACGTGATGAGCAACGAGGATGTCCTG