1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaaacaccccttctctcctgtagcctgcaccctccctacttctctcccttaactaaagattgtatttgtcggacttcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTGAGGAAGGGTGTGTTGACACGCATATATGCCCCAATG
species | Oryza sativa |
transcript | LOC_Os01g13200.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG GTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTEST: gi|86494800|gb|CI137433.1|CI137433
genomic: GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTGgtaaacaccc ... tcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTT
EST: GGAAATGAGGAACTG GTTCCGGGAACATGGTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTEST: gi|86494153|gb|CI136786.1|CI136786
genomic: GGAAATGAGGAACTGgtaaacaccc ... tcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTT
EST: CCGAGGAGGAAATGAGGAACTG GTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTEST: gi|86495100|gb|CI137733.1|CI137733
genomic: CCGAGGAGGAAATGAGGAACTGgtaaacaccc ... tcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTT
EST: AATGAGGAACTG GTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTEST: gi|86502915|gb|CI145548.1|CI145548
genomic: AATGAGGAACTGgtaaacaccc ... tcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTT
EST: GGAAATGAGGAACTG GTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTEST: gi|38474929|gb|CF959062.1|CF959062
genomic: GGAAATGAGGAACTGgtaaacaccc ... tcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTT
EST: GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG GTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTEST: gi|112787139|gb|EE592124.1|EE592124
genomic: GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTGgtaaacaccc ... tcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTT
EST: GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG GTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTEST: gi|86500934|gb|CI143567.1|CI143567
genomic: GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTGgtaaacaccc ... tcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTT
EST: GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG GTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTT
genomic: GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTGgtaaacaccc ... tcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTT
cctccctacttctctcccttaactaaagattgtatttgtcggacttcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTGAGGAAGGGTGTGTTGACACGCATATATGCCCCAATG
aactaaa putative branch site (score: 60)
cttcctcttc putative PPT
taaagattgtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacaccccttctctcctgtagcctgcaccctccctacttctctcccttaactaaagattgtatttgtcggacttcctcttcagGTTCCGGGAACATGTTTTATGGAACGACAAAGATACCAATTTGAAGCTTTTGAGGAAGGGTGTGTTGACACGCATATATGCCCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC