1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGTGTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAGgtattgtgatgtactgagaagctgtttagagtttttttttgtaaaagatgaggttttgttggagattggtccactgacaatctaaaatttaattcttcta...
species | Oryza sativa |
transcript | LOC_Os01g13200.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAG TCGCATTTGGAATGAGACTTGGCTGGCAGGTTTCTTTTACAAACCGTGCAAEST: gi|58664237|gb|CK052923.1|CK052923
genomic: GTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAGgtattgtgat ... acattttcagTCGCATTTGGAATGAGACTTGGCTGGCAGGTTTCTTTTACAAACCGTGCAA
EST: GTACAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAG TCGCATTTGGAATGAGACTTGGCTGGCAGGTTTCTTTTACAAACCGTGCAAEST: gi|88719317|gb|CI742827.1|CI742827
genomic: GTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAGgtattgtgat ... acattttcagTCGCATTTGGAATGAGACTTGGCTGGCAGGTTTCTTTTACAAACCGTGCAA
EST: GTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAG TCGCATTTGGAATGEST: gi|58660401|gb|CK049081.1|CK049081
genomic: GTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAGgtattgtgat ... acattttcagTCGCATTTGGAATG
EST: GTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAG TCGCATTTGGAATGAGACTTGGCTGGCAGGTTTCTTTTACAAACCGTGCAAEST: gi|8404394|gb|AU091748.1|AU091748
genomic: GTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAGgtattgtgat ... acattttcagTCGCATTTGGAATGAGACTTGGCTGGCAGGTTTCTTTTACAAACCGTGCAA
EST: GTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAG TCGCATTTGGAATGAGACTTGGCTGGGCAAGTTTCTTTTACAAACCGTGCA
genomic: GTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAGgtattgtgat ... acattttcagTCGCATTTGGAATGAGACTTGGCTGG-CAGGTTTCTTTTACAAACCGTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGTAAAAATCATTTACAGAACTAAAGAATTGAAAGAGAAACAGGACAGAAGgtattgtgatgtactgagaagctgtttagagtttttttttgtaaaagatgaggttttgttggagattggtccactgacaatctaaaatttaattcttcta
- - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - AAGAGA