1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAGgtgtgtaagctattactaattcaaataaaagtaagaaaagtaaaggaaaatattgcccatataccacaatagaaggcatgatttaatgaaaaccactgca...
species | Oryza sativa |
transcript | LOC_Os01g13200.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG GTTTCCATGTTTAAGAAAAATTATGATCATCTTCCAAAGGATACATATTTTEST: gi|112787139|gb|EE592124.1|EE592124
genomic: GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAGgtgtgtaagc ... ttatccgcagGTTTCCATGTTTAAGAAAAATTATGATCATCTTCCAAAGGATACATATTTT
EST: GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG GTTTCCATGTTTAAGAAAAATTATGATCATCTTCCAAAGGATACATATTTTEST: gi|8404394|gb|AU091748.1|AU091748
genomic: GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAGgtgtgtaagc ... ttatccgcagGTTTCCATGTTTAAGAAAAATTATGATCATCTTCCAAAGGATACATATTTT
EST: GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG GTTTCCATGTTTAAGAAAAATTATGATCATCTTCCAAAGG
genomic: GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAGgtgtgtaagc ... ttatccgcagGTTTCCATGTTTAAGAAAAATTATGATCATCTTCCAAAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAGgtgtgtaagctattactaattcaaataaaagtaagaaaagtaaaggaaaatattgcccatataccacaatagaaggcatgatttaatgaaaaccactgca
AGAGCA
- GAGCAG
- - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa