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CGCCGAGATCCTCGGCCGGAGCGCGGCGTCCTCCTCGCACGGCGGCATCTCGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTAACCCCCAAGgtgaggtttccgctccccgatctgatctgcgcgtggagatctcgtctccagagcggcctcgatgtgaacctcgtgccgctgaattgcgctttgctttaga...
species | Oryza sativa |
transcript | LOC_Os01g13200.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTGACCCCCAAG ATCTGTATCACGGGAAGCACATCTGCAGGGTTACACCAAATTCTTCCATGGEST: gi|88719317|gb|CI742827.1|CI742827
genomic: CGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTAACCCCCAAGgtgaggtttc ... gattctgcagATCTGTATCACGGGAAGCACATCTGCAGGGTTACACCAAATTCTTCCATGG
EST: CGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTAACCCCCAAG ATCTGTATCACGGGAAGCACATCTGCAGGGTTACACCAAATTCTTCCATGGEST: gi|58660401|gb|CK049081.1|CK049081
genomic: CGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTAACCCCCAAGgtgaggtttc ... gattctgcagATCTGTATCACGGGAAGCACATCTGCAGGGTTACACCAAATTCTTCCATGG
EST: CGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTGACCCCCAAG ATCTGTATCACGGGAAGCACATCTGCAGGGTTACACCAAATTCTTCCATGGEST: gi|8404394|gb|AU091748.1|AU091748
genomic: CGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTAACCCCCAAGgtgaggtttc ... gattctgcagATCTGTATCACGGGAAGCACATCTGCAGGGTTACACCAAATTCTTCCATGG
EST: CGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTAACCCCCAAG ATCTGTATCACGGGAAGCACATCTGCAGGGTTACACCAAATTCTTCCATGG
genomic: CGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTAACCCCCAAGgtgaggtttc ... gattctgcagATCTGTATCACGGGAAGCACATCTGCAGGGTTACACCAAATTCTTCCATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCCGAGATCCTCGGCCGGAGCGCGGCGTCCTCCTCGCACGGCGGCATCTCGCTCTACCGCGGGTGGGGCTTCGACTCCGACGCGGGACTAACCCCCAAGgtgaggtttccgctccccgatctgatctgcgcgtggagatctcgtctccagagcggcctcgatgtgaacctcgtgccgctgaattgcgctttgctttaga
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