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gtgagttgcagaataaattttctgttgaggatgtagcctgtttcacatctaatttttatttattttccccagGAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG
species | Oryza sativa |
transcript | LOC_Os01g13200.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTTTTAGATGTTCCTGATAATGTTGACATGGTTATCTTCCCCAACTAT GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAGEST: gi|112787139|gb|EE592124.1|EE592124
genomic: TGCTTTTAGATGTTCCTGATAATGTTGACATGGTTATCTTCCCCAACTATgtgagttgca ... ttttccccagGAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG
EST: TGCTTTTAGATGTTCCTGATAATGTTGACATGGTTATCTTCCCCAACTAT GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAGEST: gi|8404394|gb|AU091748.1|AU091748
genomic: TGCTTTTAGATGTTCCTGATAATGTTGACATGGTTATCTTCCCCAACTATgtgagttgca ... ttttccccagGAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG
EST: TGCTTTTAGATGTTCCTGATAATGTTGACATGGTTATCTTCCCCAACTAT GAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG
genomic: TGCTTTTAGATGTTCCTGATAATGTTGACATGGTTATCTTCCCCAACTATgtgagttgca ... ttttccccagGAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG
ttttctgttgaggatgtagcctgtttcacatctaatttttatttattttccccagGAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG
atctaat putative branch site (score: 63)
tttttatttattttcc CT-rich tract
tgtttcacatctaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttgcagaataaattttctgttgaggatgtagcctgtttcacatctaatttttatttattttccccagGAGAGCAGCATTGAGCGAGATGACATCAAAGATCCTTTCACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG