1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ataacttgtttgtgacattgcatagcatagctaattgtgtaacagtgtaagcagctagtttgataacactaataaatttggatccactcttacatgccagGCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG
species | Oryza sativa |
transcript | LOC_Os01g13200.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCACAAAGGAAGATGTGAAGCGATGTTTTATCTTGGAATTTGACAGATTG GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTGEST: gi|38474929|gb|CF959062.1|CF959062
genomic: CCACAAAGGAAGATGTGAAGCGATGTTTTATCTTGGAATTTGACAGATTGgtgagtttat ... tacatgccagGCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG
EST: CCACAAAGGAAGATGTGAAGCGATGTTTTATCTTGGAATTTGACAGATTG GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTGEST: gi|112787139|gb|EE592124.1|EE592124
genomic: CCACAAAGGAAGATGTGAAGCGATGTTTTATCTTGGAATTTGACAGATTGgtgagtttat ... tacatgccagGCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG
EST: CCACAAAGGAAGATGTGAAGCGATGTTTTATCTTGGAATTTGACAGATTG GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTGEST: gi|86500934|gb|CI143567.1|CI143567
genomic: CCACAAAGGAAGATGTGAAGCGATGTTTTATCTTGGAATTTGACAGATTGgtgagtttat ... tacatgccagGCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG
EST: GGAAGATGTGAAGCCGATGTTTTATTCTTGGAATTTGACAGATTG GCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG
genomic: GGAAGATGTGAAG-CGATGTTTTA-TCTTGGAATTTGACAGATTGgtgagtttat ... tacatgccagGCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG
tgtaagcagctagtttgataacactaataaatttggatccactcttacatgccagGCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG
tccactctt CT-rich tract
tttgataacactaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataacttgtttgtgacattgcatagcatagctaattgtgtaacagtgtaagcagctagtttgataacactaataaatttggatccactcttacatgccagGCCTTTATAATTGCATCAACAGCTACCGAGGAGGAAATGAGGAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - tgtttgt
- - - - - - - -cattgca
- - - - - - - - - - - - - - - - - - - - - - - - aagcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acactaa