Sequence
atgc intronic sequence ATGC exonic sequencegtgagtctcaataagctcaagcaaatatgcatttacttttcccataaagaaagaagcgatttattttcagagacactaggggtgggcagtgcaagtgtacccaatagtgtccctctcgtgcatgcaaacttactaccgaaaattttctgactgaattttgaagtttccttttgtgcaaatttaaatggtgcagGAGAAATTAAAAGAGTCACGTTATCAGATTACTCCATGGCAAACTGAATTGGCGAATGATGCCACTCTTCCTGTACACTCACCTACGGATCCTCTTGGAA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g01800.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g01800.1 (Oryza sativa), 3'ss of exon 9
lower sequence: GRMZM2G036206_T01 (Zea mays), 3'ss of exon 9
gtgagtctcaataagctcaagcaaatatgcatttacttttcccataaagaaagaagcgatttattttcagagacactaggggtgggcagtgcaagtgtacccaatagtgtccctctcgtgcatgcaa-acttactaccgaaaattttctgactgaattttgaagtttccttttgtgcaaatttaaatggtgcagGAGAAATTAAAAGAGTCACGTTATCAGATTACTCCATGGCAAACTGAATTGGCGAATGATGCCACTCTTCCTGTACACTCACCTACGGATCCTCTTGGAA---
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gtgagccatactaaactaccaacaatatgcattt--ttttgctacgcaaaatggc-----------------atactgtag--------------------cagtaatgagcctgtcatgttttctgcacatattaccgata-ttttcttacagaactttgaatttgccttgtatgcaaacttggatggtgcagGACAGATTAAGGGAGTCTCGATACCAGATTACTCCATGGCATACTGAATTGTCGAATAATACCAGCAATCCTGTG---TCTACTAATCCTCCTGCTGGAAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33674831|gb|CF303070.1|CF303070EST: GTTTTGTTTAAGCATCTGCAGGAGCAACTTATTATCACTGAG GAGAAATTAAAAGAGTCACGTTATCAGATTACTCCATGGCAAACTGAATTG
genomic: GTTTTGTTTAAGCATCTGCAGGAGCAACTTATTATCACTGAGgtgagtctca ... aatggtgcagGAGAAATTAAAAGAGTCACGTTATCAGATTACTCCATGGCAAACTGAATTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaaattttctgactgaattttgaagtttccttttgtgcaaatttaaatggtgcagGAGAAATTAAAAGAGTCACGTTATCAGATTACTCCATGGCAAACTGAATTGGCGAATGATGCCACTCTTCCTGTACACTCACCTACGGATCCTCTTGGAA
ttctgac putative branch site (score: 2)
aaatttaaat TA-rich tract