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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCCTCCTCCTCCGCCGCCGCCACCGATGGGGCCAACGCCGACCACCTCCTCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgtctacctcttatcctttcctacccacgaacctacccttgcaattccttcctcatcgcctcttccacaattcccctcctgtcccactcccaactcgccctattttatttccgcacaccactgaagtagctgattttgggtttccatgtttttcttttctag

Basic information

species Oryza sativa
transcript LOC_Os01g01800.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01800.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G036206_T01 (Zea mays), 5'ss of exon 1
CTCCTCCTCCTCCGCCGCCGCCACCGATGGGGCCAACGCCGACCACCTCCTCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgt--ctacctcttatcctttcctacccacgaacctacccttgcaattcctt--cctcatcgcctcttccacaattcccctcctgtccca--ctcccaactcgccctattttatttccgcacaccactgaagtagctgattttgggtttccatgtttttcttttctag
  |   |     ||||||| || | | |  | | | ||||||  ||||||||  ||||||||||||||| ||||||||||| ||||||||||||| ||||||  |   |||    ||     | |||| |    |    ||    || | |    | ||    |    || || | |   | |         |  | | |||    |||  ||||| |                                                 
AGCGGACCAGAGCGCCGCCACCGCTGGTTTGCCTAGCGCCGATTACCTCCTCAGCGTCATGCGCGCCGTAGAGGGCGCCGACGCCACCATCCGCACCCAGgtaacccgctccatcccccgtttccccatgtcaatgattttttgtttgcgtaatgtaatataataaaacataaatactagcttagtttgatttttcgagtcgtttgattccatttcag-------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674957|gb|CB671232.1|CB671232
EST:     TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAG                         TTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
genomic: TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgtctacctct ... tcttttctagTTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
EST: gi|88408047|gb|CI601525.1|CI601525
EST:     TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAG                         TTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
genomic: TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgtctacctct ... tcttttctagTTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
EST: gi|88306848|gb|CI672014.1|CI672014
EST:     TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAG                         TTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
genomic: TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgtctacctct ... tcttttctagTTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
EST: gi|88306505|gb|CI671256.1|CI671256
EST:     TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAG                         TTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
genomic: TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgtctacctct ... tcttttctagTTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
EST: gi|88592377|gb|CI710478.1|CI710478
EST:     TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAG                         TTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
genomic: TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgtctacctct ... tcttttctagTTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
EST: gi|88592519|gb|CI710625.1|CI710625
EST:     TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAG                         TTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
genomic: TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgtctacctct ... tcttttctagTTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
EST: gi|29628865|gb|CB633876.1|CB633876
EST:     TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAG                         TTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
genomic: TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgtctacctct ... tcttttctagTTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
EST: gi|88369921|gb|CI680601.1|CI680601
EST:     TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAG                         TTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA
genomic: TCCACGTCATGCGCGCCGTCGAGGGCGCCGAGGCCACCATCCGCAACCAGgtctacctct ... tcttttctagTTGGAAGAGAATAATCGCCTCAAAGAGGAACTGATGCAGAAAACGCGACAA