1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
gtaactcacctgaccacactccatgttttccctaccatttttgttgccggggaaaaagaacaacggtaggccgcaggccttccttttgtgggatggtcttgtttgcttgcgatatcctgacaaaatagaagcccttccatacagGCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGGGTTATTGCCTGCTTCAGAGATGGCCTCGAACATGTCATGGAAGCAT
species | Oryza sativa |
transcript | LOC_Os01g01800.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAG GCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGGEST: gi|58673928|gb|CK062614.1|CK062614
genomic: GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAGgtaactcacc ... ttccatacagGCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG
EST: GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAG GCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGGEST: gi|29628865|gb|CB633876.1|CB633876
genomic: GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAGgtaactcacc ... ttccatacagGCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG
EST: GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAG GCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG
genomic: GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAGgtaactcacc ... ttccatacagGCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG
gggatggtcttgtttgcttgcgatatcctgacaaaatagaagcccttccatacagGCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGGGTTATTGCCTGCTTCAGAGATGGCCTCGAACATGTCATGGAAGCAT
tcctgac putative branch site (score: 2)
cccttccat putative PPT
aaaatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcacctgaccacactccatgttttccctaccatttttgttgccggggaaaaagaacaacggtaggccgcaggccttccttttgtgggatggtcttgtttgcttgcgatatcctgacaaaatagaagcccttccatacagGCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGGGTTATTGCCTGCTTCAGAGATGGCCTCGAACATGTCATGGAAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG