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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttactttattactgctgtgtttattttagattaatgccaatcataattcataacgaacatacataaaatactgcttatcttgtgttctccaattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG

Basic information

species Oryza sativa
transcript LOC_Os01g01800.2
intron # 19
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29628866|gb|CB633877.1|CB633877
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT                         GCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
EST: gi|88250635|gb|CI348865.1|CI348865
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT                         CCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
EST: gi|88521796|gb|CI448960.1|CI448960
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT                         GCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
EST: gi|88275049|gb|CI395653.1|CI395653
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT                         GCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
EST: gi|88522029|gb|CI449759.1|CI449759
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT                         GCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
EST: gi|88257917|gb|CI360503.1|CI360503
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT                         GCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
EST: gi|88560133|gb|CI490766.1|CI490766
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT                         GCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
EST: gi|32947857|gb|BP184429.1|BP184429
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT                         GCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
EST: gi|88530544|gb|CI458948.1|CI458948
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTCCAGAAAATGCACT                         GCCNCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
EST: gi|86437315|gb|CI119037.1|CI119037
EST:     ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACT                         GCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
genomic: ACATCTGCTGATGGTGTTGAATATAATTTAAAGCCTGCAGAAAATGCACTgtgagtaccc ... aattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcataacgaacatacataaaatactgcttatcttgtgttctccaattttgcagGCCGCGGGATACCATTGTTCTGGTTTTAAGATTGTTCAGAATTATG
  tcataac  putative branch site (score: 2)
                                       ttctcca  putative PPT
          aacatacataaaata  TA-rich tract