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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcactatactccttgagttcttgtcataactattgcagaaatgctctaacctatttactttttcagAACAAAAGCAACCTCGATATTGTGACCCAGACACCGTACCCTCATATACAATCTCCAATGTCTTCCCCTGTTCAAGTTAGAGGTGATTGGGGTGTAGCAG

Basic information

species Oryza sativa
transcript LOC_Os01g01800.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01800.1 (Oryza sativa), 3'ss of exon 10
lower sequence: GRMZM2G036206_T01 (Zea mays), 3'ss of exon 10
--------------------------gtatggcactat-actccttgagttcttgtcataactattgcagaaatgctctaacctatttacttttt-cagAACAAAAGCAACCTCGATATTGTGACCCAGACACCGTACCCTCATATACAATCTCCAATGTCTTCCCCTGTTCAAGTTAGAGGTGATTGGGGTGTAGCAG
                            ||    | || |||   | |  | ||  || |   ||        | ||  ||| | ||| |||||| |||| |||||||| ||| ||||||||  ||||||    ||| |||||  ||||||| |||||||||||||||||||||| ||||||||||||||||| |   |
gtacgatatgactctttagtatatacacattcttccattactttgtcaagttttaacaca-tgatcatgtgcttcctacaacttctttgcttttttcagAGCAAAAGCAGCCTTGATATTGTCTCCCAGATGGTGTATCCTCACGTACAATCCCCAATGTCTTCCCCTGTTCAAGCTAGAGGTGATTGGGGTGCATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33674831|gb|CF303070.1|CF303070
EST:     TTCCTGTACACTCACCTACGGATCCTCTTGGAAAAGCATTGGTGACTTCA                         AACAAAAGCAACCTCGATATTGTGACCCAGACACCGTACCCTCATATACAA
genomic: TTCCTGTACACTCACCTACGGATCCTCTTGGAAAAGCATTGGTGACTTCAgtatggcact ... actttttcagAACAAAAGCAACCTCGATATTGTGACCCAGACACCGTACCCTCATATACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgagttcttgtcataactattgcagaaatgctctaacctatttactttttcagAACAAAAGCAACCTCGATATTGTGACCCAGACACCGTACCCTCATATACAATCTCCAATGTCTTCCCCTGTTCAAGTTAGAGGTGATTGGGGTGTAGCAG
                                ctctaac  putative branch site (score: 2)
                                      cctatttactttttc  CT-rich tract
                                        tatttactttttca  TA-rich tract