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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGAGCATCTAAAAGATCATCAGGGGAGCAGCCTGCCCTCGACAGCGCTGCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAGgtaactcacctgaccacactccatgttttccctaccatttttgttgccggggaaaaagaacaacggtaggccgcaggccttccttttgtgggatggtcttgtttgcttgcgatatcctgacaaaatagaagcccttccatacag

Basic information

species Oryza sativa
transcript LOC_Os01g01800.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674957|gb|CB671232.1|CB671232
EST:     GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAG                         GCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG
genomic: GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAGgtaactcacc ... ttccatacagGCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG
EST: gi|58673928|gb|CK062614.1|CK062614
EST:     GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAG                         GCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG
genomic: GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAGgtaactcacc ... ttccatacagGCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG
EST: gi|29628865|gb|CB633876.1|CB633876
EST:     GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAG                         GCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG
genomic: GCCGTCTCACAGTTCTCTACTCCATCCTCCCATTCCCTTTCTCCTACTAGgtaactcacc ... ttccatacagGCATAGAAAAGAAGGCGAGCATGATCCTAGGTTGAACCTAGCTGGACAGGG