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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGTTATCAGATTACTCCATGGCAAACTGAATTGGCGAATGATGCCACTCTTCCTGTACACTCACCTACGGATCCTCTTGGAAAAGCATTGGTGACTTCAgtatggcactatactccttgagttcttgtcataactattgcagaaatgctctaacctatttactttttcag

Basic information

species Oryza sativa
transcript LOC_Os01g01800.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g01800.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G036206_T01 (Zea mays), 5'ss of exon 10
---ACGTTATCAGATTACTCCATGGCAAACTGAATTGGCGAATGATGCCACTCTTCCTGTACACTCACCTACGGATCCTCTTGGAAAAGCATTGGTGACTTCAgtatggcac------------tatac---tccttgagtt--cttgtca-----taactattgcagaaatgctct----aacctatttacttttt-cag
    || || ||||||||||||||||| ||||||||| ||||| || |||    ||||||    ||  |||    ||||  ||||||||||||||||||| ||||| |  |             |||||   | |||   ||   ||||||     ||||   ||   |  ||||      ||| | ||| |||||| |||
GTCTCGATACCAGATTACTCCATGGCATACTGAATTGTCGAATAATACCAGCAATCCTGTG---TCTACTAATCCTCCTGCTGGAAAAGCATTGGTGACTACAgtacgatatgactctttagtatatacacattcttccattactttgtcaagttttaacacatgatcatgtgcttcctacaacttctttgcttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33674831|gb|CF303070.1|CF303070
EST:     TTCCTGTACACTCACCTACGGATCCTCTTGGAAAAGCATTGGTGACTTCA                         AACAAAAGCAACCTCGATATTGTGACCCAGACACCGTACCCTCATATACAA
genomic: TTCCTGTACACTCACCTACGGATCCTCTTGGAAAAGCATTGGTGACTTCAgtatggcact ... actttttcagAACAAAAGCAACCTCGATATTGTGACCCAGACACCGTACCCTCATATACAA