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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAAAAATCATTGGAAGTCAGCATGGCATTGTGTCTGGGACTCGAGAAAATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGgtaatatataggctatgggaagatactcacattacttactgtcatttctacatgattattggtaactaataatgggaaacatttataccag

Basic information

species Glycine max
transcript GLYMA20G39280.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39280.1 (Glycine max), 5'ss of exon 5
lower sequence: Vv05s0062g01170.t01 (Vitis vinifera), 5'ss of exon 5
TTTCAAAAATCATTGGAAGTCAGCATGGCATTGTGTCTGGGACTCGAGAAAATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGgtaat---atataggctatgggaagatactc-acattacttactgtcatttctacatgattattggtaact----aataatgggaaacatttataccag--------------------------------------------------
|    |||   ||||| |||||| |||| ||  |||||||  |||| ||||||||||| ||||||||| |||||||||| || ||  | || |||||||||| ||   | ||    | |      || | |  | |   |   | || |||| |  |  |  ||  | |||    || ||||     |  || || |                                                    
TCATGAAAGAAATTGGGAGTCAGTATGGTATCATGTCTGGATCTCGCGAAAATTCTCTTTACAATGCTCTCTGGGCGGCACAAGCGTTGCTGCGTAAAGGgtgatgctacatttatttttctttcattccctgcttggttctttctcttttccattttttcctttcttactttaaaaaaatgacttcctcttgtatcctaagacacatatatatggccttttgcataaattggcaatgaaatatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040442|gb|BM308736.1|BM308736
EST:     AATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGG                         GTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGA
genomic: AATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGgtaatatata ... tttataccagGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGA
EST: gi|208127113|gb|GD924369.1|GD924369
EST:     AATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGG                         GTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGA
genomic: AATTCTCTCTACAATGCTATCTGGGCGGCTCAGGCACTTCTTCGTAAAGGgtaatatata ... tttataccagGTCAGCAAAGACAGTTGACAAACGTATACTTTTGTTCACAAATGATGATGA