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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactattgctgcgttccttttttccttttctatgtttgtttaatagtatatgaaaaatactttgattttatcagGAAAACGAGTCGAGCAAAGAATATGTGGTTTACCTTGTCGATGCTTCACCTAAAATGTTCAGCACTACTTGCCCTGCG

Basic information

species Glycine max
transcript GLYMA20G39280.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G39280.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0062g01170.t01 (Vitis vinifera), 3'ss of exon 1
-----------------------------------------gtaactattgctgcgttccttttttccttttctatgtttgtttaatagtatatgaaaaatactttgattttatcagGAAAACGAGTCGAGCAAAGAATATGTGGTTTACCTTGTCGATGCTTCACCTAAAATGTTCAGCACTACTTGCCCTGCG
                                          | || | | |    | | |||     |||| ||||    |||    |  | |   ||          ||  | ||||||| |  |||| |||||| | ||||||||| ||||| |||||||| || |||||||||||||| ||||  |  | |
gttggtttttttgttcatctgtccccaacaagctttttaaccttacaacttccagatgcatttcaattttttgtatgggactttgggtgagtgtctgaatcttgaattcttgtttagGAAAAAGCATCGACCAAAGAGTTTGTGGTTTATCTTGTGGATGCTTCGCCCAAAATGTTCAGCACCACTTTTCAAGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttccttttctatgtttgtttaatagtatatgaaaaatactttgattttatcagGAAAACGAGTCGAGCAAAGAATATGTGGTTTACCTTGTCGATGCTTCACCTAAAATGTTCAGCACTACTTGCCCTGCG
                                              ttttatc  CT-rich tract
               tttgtttaatagtata  TA-rich tract