1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
...gtagaaatacttcagatgttcttattctaatttttgagattgtgttgtttccttttgtttgtaattataattttttgctttattttattttatttttcagCCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAAGCCACTGAGTTGCTTGAGA
species | Glycine max |
transcript | GLYMA20G39280.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAA CCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCEST: gi|18041148|gb|BM309442.1|BM309442
genomic: GCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAAgtaagcattt ... tatttttcagCCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTC
EST: ACTGGTGCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAA CCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTC
genomic: ACTGGTGCATTGGTGGAAGAACCTACTAAACGGTTTCTTCCTTATAAAAAgtaagcattt ... tatttttcagCCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTC
tgtttccttttgtttgtaattataattttttgctttattttattttatttttcagCCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAAGCCACTGAGTTGCTTGAGA
ttttttgctttatttt CT-rich tract
tttgtaattataattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaaatacttcagatgttcttattctaatttttgagattgtgttgtttccttttgtttgtaattataattttttgctttattttattttatttttcagCCAGAATATTATATTTTCAATGAAGCAACTCTCTGAAATTAAAAGAGTTTCTACTGGACATCTACATCTTTTAGGGTTCAAGCCACTGAGTTGCTTGAGA
- -gaaatac
- - - - - - - - - - - - - - - - - - -gattgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttta